Hb_003925_070

Information

Type -
Description -
Location Contig3925: 73685-74031
Sequence    

Annotation

kegg
ID rcu:RCOM_1354880
description ATOZI1, putative
nr
ID XP_002519491.1
description ATOZI1, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S0H2
description ATOZI1, putative OS=Ricinus communis GN=RCOM_1354880 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39331: 71012-74398
cDNA
(Sanger)
(ID:Location)		 025_I20.ab1: 71012-74394 , 026_O16.ab1: 71012-74240 , 042_M07.ab1: 71012-74394

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003925_070 0.0 - - ATOZI1, putative [Ricinus communis]
2 Hb_076874_010 0.0889294352 - - PREDICTED: ER lumen protein-retaining receptor [Jatropha curcas]
3 Hb_000025_050 0.1107530756 - - hypothetical protein POPTR_0003s13040g [Populus trichocarpa]
4 Hb_106411_010 0.1159254281 - - Ribosomal protein S25 family protein [Theobroma cacao]
5 Hb_004466_040 0.1377879838 - - PREDICTED: protein RER1B-like [Gossypium raimondii]
6 Hb_086022_010 0.1435024955 - - PREDICTED: succinate dehydrogenase assembly factor 1 homolog, mitochondrial [Nicotiana tomentosiformis]
7 Hb_070469_010 0.144391248 - - hypothetical protein POPTR_0002s21850g [Populus trichocarpa]
8 Hb_162040_010 0.1461220531 - - -
9 Hb_126295_010 0.1461256811 - - PREDICTED: protein SEH1 [Jatropha curcas]
10 Hb_002687_080 0.1469875704 - - hypothetical protein JCGZ_06535 [Jatropha curcas]
11 Hb_001545_050 0.147026236 - - PREDICTED: ras-related protein Rab7 [Nicotiana sylvestris]
12 Hb_004718_040 0.1471408113 - - PREDICTED: uncharacterized protein LOC105638292 [Jatropha curcas]
13 Hb_003038_220 0.1480597069 - - eukaryotic translation initiation factor 2 gamma subunit, putative [Ricinus communis]
14 Hb_002217_380 0.1496466051 - - PREDICTED: uncharacterized protein LOC105643567 [Jatropha curcas]
15 Hb_001124_020 0.1521605877 - - PREDICTED: protein yippee-like At4g27745 [Jatropha curcas]
16 Hb_133724_010 0.1528243648 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002530_010 0.1532925451 - - hypothetical protein EUGRSUZ_C02580 [Eucalyptus grandis]
18 Hb_000028_060 0.1542402127 - - -
19 Hb_002235_210 0.1560189655 - - PREDICTED: vesicle transport v-SNARE 13-like [Populus euphratica]
20 Hb_002508_010 0.1568764285 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]

Gene co-expression network

sample Hb_003925_070 Hb_003925_070 Hb_076874_010 Hb_076874_010 Hb_003925_070--Hb_076874_010 Hb_000025_050 Hb_000025_050 Hb_003925_070--Hb_000025_050 Hb_106411_010 Hb_106411_010 Hb_003925_070--Hb_106411_010 Hb_004466_040 Hb_004466_040 Hb_003925_070--Hb_004466_040 Hb_086022_010 Hb_086022_010 Hb_003925_070--Hb_086022_010 Hb_070469_010 Hb_070469_010 Hb_003925_070--Hb_070469_010 Hb_076874_010--Hb_000025_050 Hb_076874_010--Hb_106411_010 Hb_000608_110 Hb_000608_110 Hb_076874_010--Hb_000608_110 Hb_002530_010 Hb_002530_010 Hb_076874_010--Hb_002530_010 Hb_076874_010--Hb_086022_010 Hb_000025_050--Hb_106411_010 Hb_001310_110 Hb_001310_110 Hb_000025_050--Hb_001310_110 Hb_011671_090 Hb_011671_090 Hb_000025_050--Hb_011671_090 Hb_000785_030 Hb_000785_030 Hb_000025_050--Hb_000785_030 Hb_001752_040 Hb_001752_040 Hb_106411_010--Hb_001752_040 Hb_005085_020 Hb_005085_020 Hb_106411_010--Hb_005085_020 Hb_002508_010 Hb_002508_010 Hb_106411_010--Hb_002508_010 Hb_012322_020 Hb_012322_020 Hb_004466_040--Hb_012322_020 Hb_004466_040--Hb_086022_010 Hb_000103_310 Hb_000103_310 Hb_004466_040--Hb_000103_310 Hb_004466_040--Hb_000608_110 Hb_000696_010 Hb_000696_010 Hb_004466_040--Hb_000696_010 Hb_001124_020 Hb_001124_020 Hb_004466_040--Hb_001124_020 Hb_002217_380 Hb_002217_380 Hb_086022_010--Hb_002217_380 Hb_086022_010--Hb_000608_110 Hb_000556_150 Hb_000556_150 Hb_086022_010--Hb_000556_150 Hb_008511_060 Hb_008511_060 Hb_086022_010--Hb_008511_060 Hb_007951_040 Hb_007951_040 Hb_086022_010--Hb_007951_040 Hb_004935_080 Hb_004935_080 Hb_070469_010--Hb_004935_080 Hb_070469_010--Hb_076874_010 Hb_162040_010 Hb_162040_010 Hb_070469_010--Hb_162040_010 Hb_126295_010 Hb_126295_010 Hb_070469_010--Hb_126295_010 Hb_121467_010 Hb_121467_010 Hb_070469_010--Hb_121467_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
911.047 497.999 965.481 1751.4 932.874 1642.17
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
584.629 835.678 301.114 304.876 86.9664

CAGE analysis