Hb_003927_040

Information

Type -
Description -
Location Contig3927: 29904-36437
Sequence    

Annotation

kegg
ID rcu:RCOM_0327460
description CCR4-NOT transcription complex subunit, putative
nr
ID XP_002530232.1
description CCR4-NOT transcription complex subunit, putative [Ricinus communis]
swissprot
ID Q52JK6
description Probable NOT transcription complex subunit VIP2 (Fragment) OS=Nicotiana benthamiana GN=VIP2 PE=1 SV=1
trembl
ID B9SW63
description CCR4-NOT transcription complex subunit, putative OS=Ricinus communis GN=RCOM_0327460 PE=4 SV=1
Gene Ontology
ID GO:0005634
description probable not transcription complex subunit vip2 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39336: 32756-33425 , PASA_asmbl_39337: 29881-36417
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003927_040 0.0 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
2 Hb_003929_280 0.0522026931 transcription factor TF Family: CAMTA calmodulin-binding transcription activator (camta), plants, putative [Ricinus communis]
3 Hb_001751_140 0.0538427567 - - PREDICTED: uncharacterized protein LOC105648510 isoform X1 [Jatropha curcas]
4 Hb_000645_170 0.0548032278 - - conserved hypothetical protein [Ricinus communis]
5 Hb_060094_020 0.0602960339 desease resistance Gene Name: ATP_bind_1 xpa-binding protein, putative [Ricinus communis]
6 Hb_008568_020 0.0610039582 - - PREDICTED: uncharacterized protein LOC105122325 isoform X3 [Populus euphratica]
7 Hb_140049_040 0.0618111666 - - PREDICTED: uncharacterized protein LOC105632012 [Jatropha curcas]
8 Hb_000087_060 0.0618581843 - - protein transporter, putative [Ricinus communis]
9 Hb_004236_050 0.0619485606 - - PREDICTED: nipped-B-like protein A [Jatropha curcas]
10 Hb_004870_050 0.0647287651 - - PREDICTED: ATP-dependent RNA helicase DBP3 [Jatropha curcas]
11 Hb_012384_030 0.0647567767 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L5-like [Jatropha curcas]
12 Hb_003866_080 0.0657189072 - - PREDICTED: uncharacterized protein LOC105639150 [Jatropha curcas]
13 Hb_004837_180 0.0659279062 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
14 Hb_002876_130 0.0659519578 - - PREDICTED: uncharacterized protein LOC105637143 [Jatropha curcas]
15 Hb_032264_060 0.0665936922 - - hypothetical protein JCGZ_02506 [Jatropha curcas]
16 Hb_000803_070 0.0668477088 - - PREDICTED: protein TRAUCO [Jatropha curcas]
17 Hb_001089_050 0.0671685118 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 4 [Jatropha curcas]
18 Hb_000861_080 0.0679680038 - - PREDICTED: protein ELC-like [Jatropha curcas]
19 Hb_012194_030 0.06816449 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
20 Hb_001430_080 0.0685633525 - - PREDICTED: putative mediator of RNA polymerase II transcription subunit 26 [Jatropha curcas]

Gene co-expression network

sample Hb_003927_040 Hb_003927_040 Hb_003929_280 Hb_003929_280 Hb_003927_040--Hb_003929_280 Hb_001751_140 Hb_001751_140 Hb_003927_040--Hb_001751_140 Hb_000645_170 Hb_000645_170 Hb_003927_040--Hb_000645_170 Hb_060094_020 Hb_060094_020 Hb_003927_040--Hb_060094_020 Hb_008568_020 Hb_008568_020 Hb_003927_040--Hb_008568_020 Hb_140049_040 Hb_140049_040 Hb_003927_040--Hb_140049_040 Hb_004236_050 Hb_004236_050 Hb_003929_280--Hb_004236_050 Hb_004837_180 Hb_004837_180 Hb_003929_280--Hb_004837_180 Hb_012384_030 Hb_012384_030 Hb_003929_280--Hb_012384_030 Hb_000803_070 Hb_000803_070 Hb_003929_280--Hb_000803_070 Hb_002217_110 Hb_002217_110 Hb_003929_280--Hb_002217_110 Hb_001635_040 Hb_001635_040 Hb_001751_140--Hb_001635_040 Hb_001751_140--Hb_008568_020 Hb_000076_160 Hb_000076_160 Hb_001751_140--Hb_000076_160 Hb_001728_050 Hb_001728_050 Hb_001751_140--Hb_001728_050 Hb_001751_140--Hb_000803_070 Hb_000645_170--Hb_008568_020 Hb_001430_080 Hb_001430_080 Hb_000645_170--Hb_001430_080 Hb_000645_170--Hb_004236_050 Hb_001636_050 Hb_001636_050 Hb_000645_170--Hb_001636_050 Hb_154580_010 Hb_154580_010 Hb_000645_170--Hb_154580_010 Hb_023226_070 Hb_023226_070 Hb_060094_020--Hb_023226_070 Hb_004870_050 Hb_004870_050 Hb_060094_020--Hb_004870_050 Hb_060094_020--Hb_000645_170 Hb_001754_030 Hb_001754_030 Hb_060094_020--Hb_001754_030 Hb_010417_070 Hb_010417_070 Hb_060094_020--Hb_010417_070 Hb_003096_060 Hb_003096_060 Hb_008568_020--Hb_003096_060 Hb_008568_020--Hb_001635_040 Hb_008568_020--Hb_154580_010 Hb_000836_410 Hb_000836_410 Hb_008568_020--Hb_000836_410 Hb_002615_120 Hb_002615_120 Hb_008568_020--Hb_002615_120 Hb_000174_060 Hb_000174_060 Hb_140049_040--Hb_000174_060 Hb_000289_040 Hb_000289_040 Hb_140049_040--Hb_000289_040 Hb_001767_140 Hb_001767_140 Hb_140049_040--Hb_001767_140 Hb_002876_130 Hb_002876_130 Hb_140049_040--Hb_002876_130 Hb_000230_090 Hb_000230_090 Hb_140049_040--Hb_000230_090 Hb_001277_020 Hb_001277_020 Hb_140049_040--Hb_001277_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.0823 22.9166 20.1964 12.2601 15.1669 16.3307
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.64912 14.8149 11.0222 12.8773 12.1442

CAGE analysis