Hb_003927_130

Information

Type -
Description -
Location Contig3927: 117986-118904
Sequence    

Annotation

kegg
ID pda:103721898
description nudix hydrolase 9
nr
ID XP_008810496.1
description PREDICTED: nudix hydrolase 9 [Phoenix dactylifera]
swissprot
ID -
description -
trembl
ID M1B9H8
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400015551 PE=4 SV=1
Gene Ontology
ID GO:0005829
description nudix hydrolase 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39347: 117944-133300
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003927_130 0.0 - - PREDICTED: nudix hydrolase 9 [Phoenix dactylifera]
2 Hb_001383_060 0.0406550107 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
3 Hb_000086_070 0.0477075234 - - Peptidase S24/S26A/S26B/S26C family protein isoform 1 [Theobroma cacao]
4 Hb_001829_060 0.0566688197 - - Eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
5 Hb_001109_020 0.0600757759 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001433_050 0.0629667019 - - 60S ribosomal protein L18, putative [Ricinus communis]
7 Hb_000883_050 0.0663645972 - - PREDICTED: 60S ribosomal protein L37a-like, partial [Solanum tuberosum]
8 Hb_004837_140 0.0681400145 - - hypothetical protein PRUPE_ppa012469mg [Prunus persica]
9 Hb_000329_310 0.0688390118 - - PREDICTED: phosphatidate cytidylyltransferase 4, chloroplastic [Jatropha curcas]
10 Hb_003455_040 0.0703230322 - - hypothetical protein JCGZ_17270 [Jatropha curcas]
11 Hb_007479_020 0.0741276291 - - PREDICTED: CMP-sialic acid transporter 5 [Jatropha curcas]
12 Hb_000120_750 0.0746559881 desease resistance Gene Name: NTPase_1 ATP binding protein, putative [Ricinus communis]
13 Hb_002918_200 0.0749974527 - - -
14 Hb_004108_230 0.0751022837 - - PREDICTED: 6.7 kDa chloroplast outer envelope membrane protein-like [Jatropha curcas]
15 Hb_003175_040 0.0754541161 - - PREDICTED: katanin p60 ATPase-containing subunit A1 isoform X1 [Jatropha curcas]
16 Hb_000046_110 0.0754700256 - - PREDICTED: 54S ribosomal protein L39, mitochondrial [Jatropha curcas]
17 Hb_000444_050 0.0758610418 transcription factor TF Family: HMG PREDICTED: uncharacterized protein LOC105648212 isoform X2 [Jatropha curcas]
18 Hb_000205_270 0.0763976574 - - PREDICTED: uncharacterized protein LOC105632722 isoform X1 [Jatropha curcas]
19 Hb_000170_010 0.0772353876 - - o-methyltransferase, putative [Ricinus communis]
20 Hb_000085_320 0.0778276603 - - Uncharacterized protein TCM_030749 [Theobroma cacao]

Gene co-expression network

sample Hb_003927_130 Hb_003927_130 Hb_001383_060 Hb_001383_060 Hb_003927_130--Hb_001383_060 Hb_000086_070 Hb_000086_070 Hb_003927_130--Hb_000086_070 Hb_001829_060 Hb_001829_060 Hb_003927_130--Hb_001829_060 Hb_001109_020 Hb_001109_020 Hb_003927_130--Hb_001109_020 Hb_001433_050 Hb_001433_050 Hb_003927_130--Hb_001433_050 Hb_000883_050 Hb_000883_050 Hb_003927_130--Hb_000883_050 Hb_001383_060--Hb_001433_050 Hb_001584_070 Hb_001584_070 Hb_001383_060--Hb_001584_070 Hb_000340_140 Hb_000340_140 Hb_001383_060--Hb_000340_140 Hb_007479_020 Hb_007479_020 Hb_001383_060--Hb_007479_020 Hb_000120_750 Hb_000120_750 Hb_001383_060--Hb_000120_750 Hb_000086_070--Hb_001829_060 Hb_000086_070--Hb_001109_020 Hb_000444_050 Hb_000444_050 Hb_000086_070--Hb_000444_050 Hb_000086_070--Hb_000883_050 Hb_000086_070--Hb_001383_060 Hb_001829_060--Hb_001109_020 Hb_000329_310 Hb_000329_310 Hb_001829_060--Hb_000329_310 Hb_000046_110 Hb_000046_110 Hb_001829_060--Hb_000046_110 Hb_009666_040 Hb_009666_040 Hb_001829_060--Hb_009666_040 Hb_000751_130 Hb_000751_130 Hb_001829_060--Hb_000751_130 Hb_001109_020--Hb_000046_110 Hb_000205_270 Hb_000205_270 Hb_001109_020--Hb_000205_270 Hb_001109_020--Hb_000883_050 Hb_000024_030 Hb_000024_030 Hb_001433_050--Hb_000024_030 Hb_148200_010 Hb_148200_010 Hb_001433_050--Hb_148200_010 Hb_001433_050--Hb_007479_020 Hb_148930_010 Hb_148930_010 Hb_001433_050--Hb_148930_010 Hb_011794_070 Hb_011794_070 Hb_000883_050--Hb_011794_070 Hb_001427_120 Hb_001427_120 Hb_000883_050--Hb_001427_120 Hb_000703_140 Hb_000703_140 Hb_000883_050--Hb_000703_140 Hb_000260_080 Hb_000260_080 Hb_000883_050--Hb_000260_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.24195 1.99493 2.98418 3.93024 7.23275 11.1788
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.9725 19.3498 12.7714 3.81845 2.47024

CAGE analysis