Hb_003927_140

Information

Type -
Description -
Location Contig3927: 129587-133457
Sequence    

Annotation

kegg
ID rcu:RCOM_1227370
description Nudix hydrolase, putative
nr
ID XP_012064952.1
description PREDICTED: nudix hydrolase 9 isoform X1 [Jatropha curcas]
swissprot
ID Q8VYR2
description Nudix hydrolase 9 OS=Arabidopsis thaliana GN=NUDT9 PE=2 SV=1
trembl
ID A0A067L6X3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05639 PE=4 SV=1
Gene Ontology
ID GO:0005829
description nudix hydrolase isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39347: 117944-133300 , PASA_asmbl_39348: 130751-130980
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003927_140 0.0 - - PREDICTED: nudix hydrolase 9 isoform X1 [Jatropha curcas]
2 Hb_003528_060 0.0694621779 - - PREDICTED: uncharacterized protein LOC105638256 isoform X2 [Jatropha curcas]
3 Hb_000630_060 0.076223208 - - PREDICTED: iron-sulfur assembly protein IscA-like 1, mitochondrial [Jatropha curcas]
4 Hb_001818_020 0.0796422404 - - PREDICTED: 60S ribosomal protein L21-1 [Phoenix dactylifera]
5 Hb_002716_090 0.0797052154 - - U6 snRNA-associated Sm-like protein LSm8 [Hevea brasiliensis]
6 Hb_012573_070 0.0797056039 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001538_120 0.0797579762 - - PREDICTED: FAD-linked sulfhydryl oxidase ERV1 [Jatropha curcas]
8 Hb_000545_150 0.0843678532 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
9 Hb_002518_050 0.0847715818 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM10 [Jatropha curcas]
10 Hb_001638_260 0.0851070522 - - PREDICTED: 60S acidic ribosomal protein P1 [Vitis vinifera]
11 Hb_012753_230 0.0857175762 - - 60S ribosomal protein L24-1 isoform 2 [Theobroma cacao]
12 Hb_000000_170 0.0878339782 - - defender against cell death, putative [Ricinus communis]
13 Hb_004052_020 0.091003478 - - Mitochondrial import receptor subunit TOM5 [Theobroma cacao]
14 Hb_007741_050 0.0912565363 - - vesicle-associated membrane protein, putative [Ricinus communis]
15 Hb_182305_020 0.0917294084 - - PREDICTED: actin-related protein 2/3 complex subunit 3 [Jatropha curcas]
16 Hb_000510_110 0.0940682492 - - PREDICTED: signal recognition particle 9 kDa protein [Jatropha curcas]
17 Hb_000526_150 0.0944445858 - - hypothetical protein POPTR_0019s10790g, partial [Populus trichocarpa]
18 Hb_000699_160 0.094985767 - - PREDICTED: C-Myc-binding protein homolog [Jatropha curcas]
19 Hb_002864_050 0.0952829664 - - PREDICTED: ras-related protein RABH1b [Jatropha curcas]
20 Hb_000025_600 0.0973293678 - - PREDICTED: 30S ribosomal protein S17, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_003927_140 Hb_003927_140 Hb_003528_060 Hb_003528_060 Hb_003927_140--Hb_003528_060 Hb_000630_060 Hb_000630_060 Hb_003927_140--Hb_000630_060 Hb_001818_020 Hb_001818_020 Hb_003927_140--Hb_001818_020 Hb_002716_090 Hb_002716_090 Hb_003927_140--Hb_002716_090 Hb_012573_070 Hb_012573_070 Hb_003927_140--Hb_012573_070 Hb_001538_120 Hb_001538_120 Hb_003927_140--Hb_001538_120 Hb_003528_060--Hb_012573_070 Hb_003528_060--Hb_001538_120 Hb_013405_090 Hb_013405_090 Hb_003528_060--Hb_013405_090 Hb_182305_020 Hb_182305_020 Hb_003528_060--Hb_182305_020 Hb_003528_060--Hb_001818_020 Hb_033594_110 Hb_033594_110 Hb_000630_060--Hb_033594_110 Hb_007317_150 Hb_007317_150 Hb_000630_060--Hb_007317_150 Hb_000926_300 Hb_000926_300 Hb_000630_060--Hb_000926_300 Hb_002518_050 Hb_002518_050 Hb_000630_060--Hb_002518_050 Hb_002110_120 Hb_002110_120 Hb_000630_060--Hb_002110_120 Hb_000970_010 Hb_000970_010 Hb_001818_020--Hb_000970_010 Hb_000545_150 Hb_000545_150 Hb_001818_020--Hb_000545_150 Hb_001584_070 Hb_001584_070 Hb_001818_020--Hb_001584_070 Hb_000025_600 Hb_000025_600 Hb_001818_020--Hb_000025_600 Hb_000007_100 Hb_000007_100 Hb_001818_020--Hb_000007_100 Hb_001638_260 Hb_001638_260 Hb_001818_020--Hb_001638_260 Hb_001247_350 Hb_001247_350 Hb_002716_090--Hb_001247_350 Hb_002716_090--Hb_001638_260 Hb_005496_030 Hb_005496_030 Hb_002716_090--Hb_005496_030 Hb_009554_010 Hb_009554_010 Hb_002716_090--Hb_009554_010 Hb_001214_140 Hb_001214_140 Hb_002716_090--Hb_001214_140 Hb_012573_070--Hb_000545_150 Hb_012573_070--Hb_002518_050 Hb_012573_070--Hb_000926_300 Hb_001314_100 Hb_001314_100 Hb_012573_070--Hb_001314_100 Hb_003683_110 Hb_003683_110 Hb_012573_070--Hb_003683_110 Hb_000057_070 Hb_000057_070 Hb_001538_120--Hb_000057_070 Hb_001538_120--Hb_000545_150 Hb_001538_120--Hb_012573_070 Hb_001538_120--Hb_001818_020 Hb_001538_120--Hb_013405_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.0496 3.03873 7.42503 7.10256 13.0717 11.1226
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.0496 31.1369 10.1702 4.22731 1.94312

CAGE analysis