Hb_003929_120

Information

Type -
Description -
Location Contig3929: 72625-76315
Sequence    

Annotation

kegg
ID rcu:RCOM_1003760
description 50S ribosomal protein L3, putative
nr
ID XP_012084200.1
description PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Jatropha curcas]
swissprot
ID Q9LRN8
description 50S ribosomal protein L3-2, chloroplastic OS=Arabidopsis thaliana GN=RPL3B PE=2 SV=1
trembl
ID A0A067K860
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19089 PE=3 SV=1
Gene Ontology
ID GO:0005739
description 50s ribosomal protein l3- chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39353: 72664-76122
cDNA
(Sanger)
(ID:Location)		 047_J02.ab1: 72664-74445

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003929_120 0.0 - - PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Jatropha curcas]
2 Hb_001575_020 0.0675944443 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000069_100 0.0772802444 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001616_060 0.0844754792 - - PREDICTED: DNA-directed RNA polymerase subunit 10-like protein [Jatropha curcas]
5 Hb_007382_150 0.0857561759 - - PREDICTED: GDT1-like protein 4 [Jatropha curcas]
6 Hb_003938_180 0.0873018581 - - lesion inducing family protein [Populus trichocarpa]
7 Hb_000224_090 0.0888256241 - - Eukaryotic translation initiation factor 1A [Gossypium arboreum]
8 Hb_006831_030 0.0894222305 - - PREDICTED: ras-related protein RABB1c [Fragaria vesca subsp. vesca]
9 Hb_000398_160 0.0894368327 - - GDP-mannose transporter, putative [Ricinus communis]
10 Hb_002078_460 0.0899428278 - - -
11 Hb_002097_060 0.0916615006 - - PREDICTED: 50S ribosomal protein L9, chloroplastic-like isoform X1 [Jatropha curcas]
12 Hb_001006_180 0.0933389525 - - PREDICTED: endonuclease V-like [Jatropha curcas]
13 Hb_001862_100 0.0934920517 - - PREDICTED: uncharacterized protein LOC105639799 isoform X2 [Jatropha curcas]
14 Hb_001762_060 0.1019259876 - - pantothenate kinase, putative [Ricinus communis]
15 Hb_001935_030 0.1025043776 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005841_050 0.1062112338 - - PREDICTED: F-box protein SKIP1-like [Jatropha curcas]
17 Hb_011245_020 0.1068617017 - - Ferrochelatase [Medicago truncatula]
18 Hb_001545_060 0.1088152996 - - PREDICTED: uncharacterized protein LOC105643880 [Jatropha curcas]
19 Hb_003147_050 0.1093734565 - - nucleic acid binding protein, putative [Ricinus communis]
20 Hb_000162_140 0.109387234 transcription factor TF Family: CSD PREDICTED: glycine-rich protein 2 [Jatropha curcas]

Gene co-expression network

sample Hb_003929_120 Hb_003929_120 Hb_001575_020 Hb_001575_020 Hb_003929_120--Hb_001575_020 Hb_000069_100 Hb_000069_100 Hb_003929_120--Hb_000069_100 Hb_001616_060 Hb_001616_060 Hb_003929_120--Hb_001616_060 Hb_007382_150 Hb_007382_150 Hb_003929_120--Hb_007382_150 Hb_003938_180 Hb_003938_180 Hb_003929_120--Hb_003938_180 Hb_000224_090 Hb_000224_090 Hb_003929_120--Hb_000224_090 Hb_001575_020--Hb_001616_060 Hb_002097_060 Hb_002097_060 Hb_001575_020--Hb_002097_060 Hb_001575_020--Hb_000069_100 Hb_000061_300 Hb_000061_300 Hb_001575_020--Hb_000061_300 Hb_001160_030 Hb_001160_030 Hb_001575_020--Hb_001160_030 Hb_000069_100--Hb_002097_060 Hb_006831_030 Hb_006831_030 Hb_000069_100--Hb_006831_030 Hb_000329_330 Hb_000329_330 Hb_000069_100--Hb_000329_330 Hb_000069_100--Hb_001616_060 Hb_000212_260 Hb_000212_260 Hb_000069_100--Hb_000212_260 Hb_006573_220 Hb_006573_220 Hb_000069_100--Hb_006573_220 Hb_002078_460 Hb_002078_460 Hb_001616_060--Hb_002078_460 Hb_001616_060--Hb_007382_150 Hb_001616_060--Hb_002097_060 Hb_008289_060 Hb_008289_060 Hb_001616_060--Hb_008289_060 Hb_007382_150--Hb_002097_060 Hb_007382_150--Hb_006573_220 Hb_007382_150--Hb_000069_100 Hb_007943_090 Hb_007943_090 Hb_007382_150--Hb_007943_090 Hb_003376_030 Hb_003376_030 Hb_007382_150--Hb_003376_030 Hb_001862_100 Hb_001862_100 Hb_003938_180--Hb_001862_100 Hb_003938_180--Hb_000069_100 Hb_002471_080 Hb_002471_080 Hb_003938_180--Hb_002471_080 Hb_005731_170 Hb_005731_170 Hb_003938_180--Hb_005731_170 Hb_003938_180--Hb_007382_150 Hb_148200_010 Hb_148200_010 Hb_003938_180--Hb_148200_010 Hb_000236_150 Hb_000236_150 Hb_000224_090--Hb_000236_150 Hb_003053_030 Hb_003053_030 Hb_000224_090--Hb_003053_030 Hb_000224_090--Hb_000069_100 Hb_000163_130 Hb_000163_130 Hb_000224_090--Hb_000163_130 Hb_000722_040 Hb_000722_040 Hb_000224_090--Hb_000722_040 Hb_012539_020 Hb_012539_020 Hb_000224_090--Hb_012539_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.1968 6.58495 4.0383 11.5169 12.9188 29.7438
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
65.7067 86.3538 83.2913 18.3436 11.2357

CAGE analysis