Hb_003929_130

Information

Type -
Description -
Location Contig3929: 77235-77969
Sequence    

Annotation

kegg
ID pop:POPTR_0010s00460g
description POPTRDRAFT_565467; hypothetical protein
nr
ID XP_012084199.1
description PREDICTED: uncharacterized protein LOC105643628 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JYW7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19088 PE=4 SV=1
Gene Ontology
ID GO:0008270
description dna binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003929_130 0.0 - - PREDICTED: uncharacterized protein LOC105643628 [Jatropha curcas]
2 Hb_002391_310 0.1037037542 - - hypothetical protein PRUPE_ppa021315mg [Prunus persica]
3 Hb_000976_310 0.1080359516 - - PREDICTED: protein EMSY-LIKE 3 isoform X1 [Jatropha curcas]
4 Hb_005725_210 0.1129237887 - - PREDICTED: RNA-binding protein 1 [Jatropha curcas]
5 Hb_000696_150 0.1129647663 - - PREDICTED: pentatricopeptide repeat-containing protein At3g51320 [Jatropha curcas]
6 Hb_000189_560 0.1132802177 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1 [Jatropha curcas]
7 Hb_001473_040 0.1139103707 - - serine/threonine protein kinase, putative [Ricinus communis]
8 Hb_001838_060 0.1141239463 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1b(c38)-like isoform X3 [Jatropha curcas]
9 Hb_005015_070 0.1152013127 - - PREDICTED: pentatricopeptide repeat-containing protein At4g39530 [Jatropha curcas]
10 Hb_012107_060 0.116024886 - - hypothetical protein JCGZ_17178 [Jatropha curcas]
11 Hb_008770_030 0.1199248361 - - PREDICTED: MACPF domain-containing protein At4g24290-like [Jatropha curcas]
12 Hb_001329_160 0.1201122338 - - PREDICTED: uncharacterized protein LOC105642679 isoform X1 [Jatropha curcas]
13 Hb_004800_080 0.1202665452 - - PREDICTED: acidic leucine-rich nuclear phosphoprotein 32-related protein [Jatropha curcas]
14 Hb_003994_060 0.1206169007 - - PREDICTED: uncharacterized protein LOC105646110 isoform X3 [Jatropha curcas]
15 Hb_000213_100 0.120979521 - - PREDICTED: pentatricopeptide repeat-containing protein At1g79540-like [Jatropha curcas]
16 Hb_000175_220 0.1218604621 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Jatropha curcas]
17 Hb_001005_190 0.1239986342 - - PREDICTED: UPF0496 protein At3g19330-like isoform X1 [Jatropha curcas]
18 Hb_003371_090 0.1241607149 - - PREDICTED: uncharacterized protein LOC105650336 [Jatropha curcas]
19 Hb_009382_010 0.1245508988 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
20 Hb_033772_030 0.1258806086 - - PREDICTED: CST complex subunit CTC1 [Jatropha curcas]

Gene co-expression network

sample Hb_003929_130 Hb_003929_130 Hb_002391_310 Hb_002391_310 Hb_003929_130--Hb_002391_310 Hb_000976_310 Hb_000976_310 Hb_003929_130--Hb_000976_310 Hb_005725_210 Hb_005725_210 Hb_003929_130--Hb_005725_210 Hb_000696_150 Hb_000696_150 Hb_003929_130--Hb_000696_150 Hb_000189_560 Hb_000189_560 Hb_003929_130--Hb_000189_560 Hb_001473_040 Hb_001473_040 Hb_003929_130--Hb_001473_040 Hb_004800_080 Hb_004800_080 Hb_002391_310--Hb_004800_080 Hb_000056_240 Hb_000056_240 Hb_002391_310--Hb_000056_240 Hb_000556_160 Hb_000556_160 Hb_002391_310--Hb_000556_160 Hb_000329_710 Hb_000329_710 Hb_002391_310--Hb_000329_710 Hb_000710_060 Hb_000710_060 Hb_002391_310--Hb_000710_060 Hb_000041_100 Hb_000041_100 Hb_002391_310--Hb_000041_100 Hb_001838_060 Hb_001838_060 Hb_000976_310--Hb_001838_060 Hb_001329_160 Hb_001329_160 Hb_000976_310--Hb_001329_160 Hb_001157_040 Hb_001157_040 Hb_000976_310--Hb_001157_040 Hb_008959_020 Hb_008959_020 Hb_000976_310--Hb_008959_020 Hb_001546_080 Hb_001546_080 Hb_000976_310--Hb_001546_080 Hb_000976_310--Hb_000189_560 Hb_002798_070 Hb_002798_070 Hb_005725_210--Hb_002798_070 Hb_000442_010 Hb_000442_010 Hb_005725_210--Hb_000442_010 Hb_003030_060 Hb_003030_060 Hb_005725_210--Hb_003030_060 Hb_004916_010 Hb_004916_010 Hb_005725_210--Hb_004916_010 Hb_002818_030 Hb_002818_030 Hb_005725_210--Hb_002818_030 Hb_001828_130 Hb_001828_130 Hb_005725_210--Hb_001828_130 Hb_000679_090 Hb_000679_090 Hb_000696_150--Hb_000679_090 Hb_000866_220 Hb_000866_220 Hb_000696_150--Hb_000866_220 Hb_004586_340 Hb_004586_340 Hb_000696_150--Hb_004586_340 Hb_000056_210 Hb_000056_210 Hb_000696_150--Hb_000056_210 Hb_005015_070 Hb_005015_070 Hb_000696_150--Hb_005015_070 Hb_000696_150--Hb_001157_040 Hb_000189_560--Hb_000866_220 Hb_007532_030 Hb_007532_030 Hb_000189_560--Hb_007532_030 Hb_000185_030 Hb_000185_030 Hb_000189_560--Hb_000185_030 Hb_007508_090 Hb_007508_090 Hb_000189_560--Hb_007508_090 Hb_000189_560--Hb_000710_060 Hb_004355_020 Hb_004355_020 Hb_000189_560--Hb_004355_020 Hb_005188_020 Hb_005188_020 Hb_001473_040--Hb_005188_020 Hb_001825_060 Hb_001825_060 Hb_001473_040--Hb_001825_060 Hb_000230_500 Hb_000230_500 Hb_001473_040--Hb_000230_500 Hb_012573_040 Hb_012573_040 Hb_001473_040--Hb_012573_040 Hb_002217_020 Hb_002217_020 Hb_001473_040--Hb_002217_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.73606 13.8988 3.62184 2.68679 4.55637 4.7323
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.97565 11.7154 9.60131 7.46142 5.79673

CAGE analysis