Hb_003929_160

Information

Type -
Description -
Location Contig3929: 87695-91352
Sequence    

Annotation

kegg
ID tcc:TCM_021489
description Pyruvate dehydrogenase kinase isoform 1
nr
ID XP_012084195.1
description PREDICTED: pyruvate dehydrogenase (acetyl-transferring) kinase, mitochondrial [Jatropha curcas]
swissprot
ID Q9SBJ1
description [Pyruvate dehydrogenase (acetyl-transferring)] kinase, mitochondrial OS=Arabidopsis thaliana GN=PDK PE=1 SV=1
trembl
ID A0A067K854
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19084 PE=4 SV=1
Gene Ontology
ID GO:0004740
description pyruvate dehydrogenase (acetyl-transferring) mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39359: 87691-91354
cDNA
(Sanger)
(ID:Location)		 013_I05.ab1: 89881-91323

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003929_160 0.0 - - PREDICTED: pyruvate dehydrogenase (acetyl-transferring) kinase, mitochondrial [Jatropha curcas]
2 Hb_003001_120 0.0518885813 - - PREDICTED: E3 ubiquitin-protein ligase RNF4 isoform X2 [Jatropha curcas]
3 Hb_007380_070 0.0623946747 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
4 Hb_004109_090 0.063667291 - - ubiquitin-protein ligase, putative [Ricinus communis]
5 Hb_005539_350 0.0661020099 - - conserved hypothetical protein [Ricinus communis]
6 Hb_005663_060 0.0665602994 - - PREDICTED: uncharacterized protein LOC105770600 [Gossypium raimondii]
7 Hb_000926_280 0.0710970418 - - ubiquitin-activating enzyme E1, putative [Ricinus communis]
8 Hb_011689_080 0.0714054062 - - PREDICTED: uncharacterized protein LOC105631867 [Jatropha curcas]
9 Hb_006541_030 0.0719179486 - - PREDICTED: uncharacterized protein LOC105628287 [Jatropha curcas]
10 Hb_000398_180 0.072472723 - - hypothetical protein PRUPE_ppa009665mg [Prunus persica]
11 Hb_000089_220 0.0749666832 - - PREDICTED: protein FAM133-like [Populus euphratica]
12 Hb_006922_100 0.0751793834 - - PREDICTED: uncharacterized protein LOC105645470 isoform X1 [Jatropha curcas]
13 Hb_000120_950 0.075888523 - - PREDICTED: protein GRIP [Jatropha curcas]
14 Hb_003376_040 0.0760258333 - - PREDICTED: uncharacterized protein LOC105642177 [Jatropha curcas]
15 Hb_003001_140 0.0768564785 - - PREDICTED: RPM1-interacting protein 4 [Jatropha curcas]
16 Hb_000395_170 0.0775656272 - - PREDICTED: probable transcriptional regulatory protein At2g25830 [Jatropha curcas]
17 Hb_002774_060 0.0787234981 - - PREDICTED: uncharacterized protein LOC105630599 isoform X2 [Jatropha curcas]
18 Hb_003406_010 0.0802674881 - - putative ATP-dependent RNA helicase DHX36 [Morus notabilis]
19 Hb_003175_010 0.0803358252 - - PREDICTED: 39S ribosomal protein L4, mitochondrial [Jatropha curcas]
20 Hb_007951_050 0.0809338082 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_003929_160 Hb_003929_160 Hb_003001_120 Hb_003001_120 Hb_003929_160--Hb_003001_120 Hb_007380_070 Hb_007380_070 Hb_003929_160--Hb_007380_070 Hb_004109_090 Hb_004109_090 Hb_003929_160--Hb_004109_090 Hb_005539_350 Hb_005539_350 Hb_003929_160--Hb_005539_350 Hb_005663_060 Hb_005663_060 Hb_003929_160--Hb_005663_060 Hb_000926_280 Hb_000926_280 Hb_003929_160--Hb_000926_280 Hb_011689_080 Hb_011689_080 Hb_003001_120--Hb_011689_080 Hb_001936_080 Hb_001936_080 Hb_003001_120--Hb_001936_080 Hb_001269_680 Hb_001269_680 Hb_003001_120--Hb_001269_680 Hb_118707_030 Hb_118707_030 Hb_003001_120--Hb_118707_030 Hb_000230_200 Hb_000230_200 Hb_003001_120--Hb_000230_200 Hb_006541_030 Hb_006541_030 Hb_007380_070--Hb_006541_030 Hb_001671_020 Hb_001671_020 Hb_007380_070--Hb_001671_020 Hb_000398_180 Hb_000398_180 Hb_007380_070--Hb_000398_180 Hb_007380_070--Hb_005539_350 Hb_028872_140 Hb_028872_140 Hb_007380_070--Hb_028872_140 Hb_003175_010 Hb_003175_010 Hb_004109_090--Hb_003175_010 Hb_000409_020 Hb_000409_020 Hb_004109_090--Hb_000409_020 Hb_004724_200 Hb_004724_200 Hb_004109_090--Hb_004724_200 Hb_001818_090 Hb_001818_090 Hb_004109_090--Hb_001818_090 Hb_004109_090--Hb_005663_060 Hb_005539_350--Hb_001269_680 Hb_005539_350--Hb_006541_030 Hb_002874_190 Hb_002874_190 Hb_005539_350--Hb_002874_190 Hb_002007_060 Hb_002007_060 Hb_005539_350--Hb_002007_060 Hb_000840_030 Hb_000840_030 Hb_005539_350--Hb_000840_030 Hb_003092_040 Hb_003092_040 Hb_005663_060--Hb_003092_040 Hb_032202_190 Hb_032202_190 Hb_005663_060--Hb_032202_190 Hb_006922_100 Hb_006922_100 Hb_005663_060--Hb_006922_100 Hb_007441_120 Hb_007441_120 Hb_005663_060--Hb_007441_120 Hb_002016_110 Hb_002016_110 Hb_005663_060--Hb_002016_110 Hb_005663_060--Hb_000409_020 Hb_000926_280--Hb_003175_010 Hb_000030_300 Hb_000030_300 Hb_000926_280--Hb_000030_300 Hb_007951_060 Hb_007951_060 Hb_000926_280--Hb_007951_060 Hb_000926_280--Hb_011689_080 Hb_002391_300 Hb_002391_300 Hb_000926_280--Hb_002391_300 Hb_000327_120 Hb_000327_120 Hb_000926_280--Hb_000327_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
147.37 66.7008 76.9218 75.1766 132.355 191.037
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
156.767 143.115 170.938 52.5331 66.3206

CAGE analysis