Hb_003929_230

Information

Type -
Description -
Location Contig3929: 142026-150534
Sequence    

Annotation

kegg
ID egr:104415288
description S-adenosylmethionine synthase 2
nr
ID XP_010270953.1
description PREDICTED: S-adenosylmethionine synthase 5 [Nelumbo nucifera]
swissprot
ID A7Q0V4
description S-adenosylmethionine synthase 5 OS=Vitis vinifera GN=METK5 PE=3 SV=1
trembl
ID A0A059B5H9
description S-adenosylmethionine synthase OS=Eucalyptus grandis GN=EUGRSUZ_H04112 PE=3 SV=1
Gene Ontology
ID GO:0005737
description s-adenosylmethionine synthase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39372: 136776-143319 , PASA_asmbl_39373: 138588-143319
cDNA
(Sanger)
(ID:Location)		 031_N11.ab1: 142557-143319 , 045_K14.ab1: 142540-143319

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003929_230 0.0 - - PREDICTED: S-adenosylmethionine synthase 5 [Nelumbo nucifera]
2 Hb_003001_130 0.1093581805 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001318_100 0.122603893 - - s-adenosylmethionine synthetase, putative [Ricinus communis]
4 Hb_005408_100 0.1243815917 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 14 [Jatropha curcas]
5 Hb_000349_200 0.1252564184 - - PREDICTED: probable sugar phosphate/phosphate translocator At1g12500 [Jatropha curcas]
6 Hb_000109_190 0.1278715491 - - PREDICTED: RING-H2 finger protein ATL47 [Jatropha curcas]
7 Hb_000603_020 0.131692806 - - PREDICTED: uncharacterized protein LOC105638063 isoform X1 [Jatropha curcas]
8 Hb_010050_020 0.1362973796 - - PREDICTED: uncharacterized protein LOC102601222 [Solanum tuberosum]
9 Hb_006570_090 0.1364231674 - - tubulin beta chain, putative [Ricinus communis]
10 Hb_002740_100 0.1379489363 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
11 Hb_000011_070 0.1383995402 - - PREDICTED: CO(2)-response secreted protease-like [Jatropha curcas]
12 Hb_000271_220 0.1412818975 - - PREDICTED: xylosyltransferase 2 [Jatropha curcas]
13 Hb_034507_090 0.1426798626 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic [Jatropha curcas]
14 Hb_004241_110 0.1431592099 - - Minor allergen Alt a, putative [Ricinus communis]
15 Hb_000320_270 0.1433013418 - - PREDICTED: 5'-adenylylsulfate reductase 1, chloroplastic [Jatropha curcas]
16 Hb_004007_070 0.1447027244 - - adenylsulfate kinase, putative [Ricinus communis]
17 Hb_000283_140 0.1451786778 - - PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
18 Hb_001353_020 0.1458138357 - - conserved hypothetical protein [Ricinus communis]
19 Hb_189003_070 0.1467302205 - - PREDICTED: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A-like [Jatropha curcas]
20 Hb_012807_150 0.1487487433 - - PREDICTED: alpha-L-fucosidase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_003929_230 Hb_003929_230 Hb_003001_130 Hb_003001_130 Hb_003929_230--Hb_003001_130 Hb_001318_100 Hb_001318_100 Hb_003929_230--Hb_001318_100 Hb_005408_100 Hb_005408_100 Hb_003929_230--Hb_005408_100 Hb_000349_200 Hb_000349_200 Hb_003929_230--Hb_000349_200 Hb_000109_190 Hb_000109_190 Hb_003929_230--Hb_000109_190 Hb_000603_020 Hb_000603_020 Hb_003929_230--Hb_000603_020 Hb_003001_130--Hb_000603_020 Hb_000928_120 Hb_000928_120 Hb_003001_130--Hb_000928_120 Hb_000283_140 Hb_000283_140 Hb_003001_130--Hb_000283_140 Hb_004241_110 Hb_004241_110 Hb_003001_130--Hb_004241_110 Hb_000227_280 Hb_000227_280 Hb_003001_130--Hb_000227_280 Hb_000271_220 Hb_000271_220 Hb_003001_130--Hb_000271_220 Hb_003266_090 Hb_003266_090 Hb_001318_100--Hb_003266_090 Hb_010222_040 Hb_010222_040 Hb_001318_100--Hb_010222_040 Hb_009113_080 Hb_009113_080 Hb_001318_100--Hb_009113_080 Hb_000659_040 Hb_000659_040 Hb_001318_100--Hb_000659_040 Hb_003125_210 Hb_003125_210 Hb_001318_100--Hb_003125_210 Hb_000856_200 Hb_000856_200 Hb_001318_100--Hb_000856_200 Hb_000230_470 Hb_000230_470 Hb_005408_100--Hb_000230_470 Hb_005408_100--Hb_000109_190 Hb_002909_100 Hb_002909_100 Hb_005408_100--Hb_002909_100 Hb_000320_270 Hb_000320_270 Hb_005408_100--Hb_000320_270 Hb_002740_100 Hb_002740_100 Hb_005408_100--Hb_002740_100 Hb_000753_120 Hb_000753_120 Hb_005408_100--Hb_000753_120 Hb_000349_200--Hb_000271_220 Hb_000011_070 Hb_000011_070 Hb_000349_200--Hb_000011_070 Hb_000349_200--Hb_000603_020 Hb_003006_090 Hb_003006_090 Hb_000349_200--Hb_003006_090 Hb_000056_190 Hb_000056_190 Hb_000349_200--Hb_000056_190 Hb_000109_190--Hb_003001_130 Hb_000479_060 Hb_000479_060 Hb_000109_190--Hb_000479_060 Hb_020805_120 Hb_020805_120 Hb_000109_190--Hb_020805_120 Hb_000365_280 Hb_000365_280 Hb_000109_190--Hb_000365_280 Hb_000603_020--Hb_000271_220 Hb_012807_150 Hb_012807_150 Hb_000603_020--Hb_012807_150 Hb_000603_020--Hb_000283_140 Hb_000320_350 Hb_000320_350 Hb_000603_020--Hb_000320_350 Hb_000424_030 Hb_000424_030 Hb_000603_020--Hb_000424_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.7797 114.46 116.916 245.779 3.06181 8.57125
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.1654 4.9606 14.9176 50.0029 121.043

CAGE analysis