Hb_003929_240

Information

Type -
Description -
Location Contig3929: 164172-168759
Sequence    

Annotation

kegg
ID fve:101295415
description uncharacterized protein LOC101295415
nr
ID XP_012084187.1
description PREDICTED: uncharacterized protein LOC105643616 isoform X2 [Jatropha curcas]
swissprot
ID F4IN32
description MATH domain and coiled-coil domain-containing protein At2g42460 OS=Arabidopsis thaliana GN=At2g42460 PE=2 SV=1
trembl
ID A0A067K6U5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19075 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39378: 164186-164699 , PASA_asmbl_39379: 167070-168513 , PASA_asmbl_39380: 167070-168523 , PASA_asmbl_39381: 168311-168558 , PASA_asmbl_39382: 168721-170895 , PASA_asmbl_39383: 169523-170895
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003929_240 0.0 - - PREDICTED: uncharacterized protein LOC105643616 isoform X2 [Jatropha curcas]
2 Hb_001257_050 0.1010239342 - - PREDICTED: LOW QUALITY PROTEIN: protein YLS9 [Jatropha curcas]
3 Hb_000005_370 0.1021004735 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105634024 [Jatropha curcas]
4 Hb_003018_150 0.1214563224 - - PREDICTED: uncharacterized protein LOC105628869 [Jatropha curcas]
5 Hb_006750_010 0.1260053071 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
6 Hb_001699_080 0.1280032412 - - unnamed protein product [Coffea canephora]
7 Hb_000103_130 0.1305751285 - - PREDICTED: protein NETWORKED 1A [Jatropha curcas]
8 Hb_000056_110 0.1356553179 - - PREDICTED: uncharacterized protein LOC105630405 [Jatropha curcas]
9 Hb_000008_070 0.1364878087 - - kinase, putative [Ricinus communis]
10 Hb_003462_040 0.1370935997 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
11 Hb_001210_060 0.1394624991 - - PREDICTED: pleiotropic drug resistance protein 1-like [Jatropha curcas]
12 Hb_002613_040 0.1404040188 - - phosphate translocator-related family protein [Populus trichocarpa]
13 Hb_002820_150 0.1412335398 - - zinc finger protein, putative [Ricinus communis]
14 Hb_003835_080 0.1416119536 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X2 [Jatropha curcas]
15 Hb_001278_020 0.1422511678 - - sucrose synthase 6 [Hevea brasiliensis]
16 Hb_001474_060 0.1432421238 transcription factor TF Family: ARF PREDICTED: auxin response factor 16 [Jatropha curcas]
17 Hb_001369_010 0.1441453463 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
18 Hb_006569_080 0.1446144631 desease resistance Gene Name: NB-ARC hypothetical protein VITISV_024559 [Vitis vinifera]
19 Hb_002999_070 0.1450525812 - - glucose-methanol-choline (gmc) oxidoreductase, putative [Ricinus communis]
20 Hb_001014_020 0.1468656914 - - gene GA family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_003929_240 Hb_003929_240 Hb_001257_050 Hb_001257_050 Hb_003929_240--Hb_001257_050 Hb_000005_370 Hb_000005_370 Hb_003929_240--Hb_000005_370 Hb_003018_150 Hb_003018_150 Hb_003929_240--Hb_003018_150 Hb_006750_010 Hb_006750_010 Hb_003929_240--Hb_006750_010 Hb_001699_080 Hb_001699_080 Hb_003929_240--Hb_001699_080 Hb_000103_130 Hb_000103_130 Hb_003929_240--Hb_000103_130 Hb_000008_070 Hb_000008_070 Hb_001257_050--Hb_000008_070 Hb_001474_060 Hb_001474_060 Hb_001257_050--Hb_001474_060 Hb_000139_060 Hb_000139_060 Hb_001257_050--Hb_000139_060 Hb_001257_050--Hb_000005_370 Hb_001541_200 Hb_001541_200 Hb_001257_050--Hb_001541_200 Hb_003849_070 Hb_003849_070 Hb_000005_370--Hb_003849_070 Hb_000005_370--Hb_001474_060 Hb_001124_230 Hb_001124_230 Hb_000005_370--Hb_001124_230 Hb_001832_170 Hb_001832_170 Hb_000005_370--Hb_001832_170 Hb_000847_030 Hb_000847_030 Hb_003018_150--Hb_000847_030 Hb_005914_160 Hb_005914_160 Hb_003018_150--Hb_005914_160 Hb_001210_060 Hb_001210_060 Hb_003018_150--Hb_001210_060 Hb_003058_170 Hb_003058_170 Hb_003018_150--Hb_003058_170 Hb_020141_030 Hb_020141_030 Hb_003018_150--Hb_020141_030 Hb_000618_110 Hb_000618_110 Hb_003018_150--Hb_000618_110 Hb_003462_040 Hb_003462_040 Hb_006750_010--Hb_003462_040 Hb_028396_020 Hb_028396_020 Hb_006750_010--Hb_028396_020 Hb_001369_010 Hb_001369_010 Hb_006750_010--Hb_001369_010 Hb_000820_110 Hb_000820_110 Hb_006750_010--Hb_000820_110 Hb_001195_380 Hb_001195_380 Hb_006750_010--Hb_001195_380 Hb_019516_060 Hb_019516_060 Hb_006750_010--Hb_019516_060 Hb_001699_080--Hb_000103_130 Hb_001512_130 Hb_001512_130 Hb_001699_080--Hb_001512_130 Hb_015807_130 Hb_015807_130 Hb_001699_080--Hb_015807_130 Hb_000270_380 Hb_000270_380 Hb_001699_080--Hb_000270_380 Hb_002081_020 Hb_002081_020 Hb_001699_080--Hb_002081_020 Hb_005656_120 Hb_005656_120 Hb_001699_080--Hb_005656_120 Hb_002613_040 Hb_002613_040 Hb_000103_130--Hb_002613_040 Hb_001538_080 Hb_001538_080 Hb_000103_130--Hb_001538_080 Hb_000103_130--Hb_001210_060 Hb_163950_050 Hb_163950_050 Hb_000103_130--Hb_163950_050 Hb_004032_190 Hb_004032_190 Hb_000103_130--Hb_004032_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.14993 0.748716 2.20845 4.25848 0.231055 0.104443
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.171091 0.246781 0.0422724 0.18786 5.13206

CAGE analysis