Hb_003929_250

Information

Type -
Description -
Location Contig3929: 169311-171019
Sequence    

Annotation

kegg
ID pop:POPTR_0008s09910g
description POPTRDRAFT_820533; hypothetical protein
nr
ID XP_012092730.1
description PREDICTED: proteasome assembly chaperone 4 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JL75
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08633 PE=4 SV=1
Gene Ontology
ID GO:0000502
description proteasome assembly chaperone 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39382: 168721-170895 , PASA_asmbl_39383: 169523-170895
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003929_250 0.0 - - PREDICTED: proteasome assembly chaperone 4 [Jatropha curcas]
2 Hb_000340_300 0.0549966346 - - methyl-CpG-binding domain-containing family protein [Populus trichocarpa]
3 Hb_000920_180 0.0565900172 - - PREDICTED: F-box protein SKIP5 [Jatropha curcas]
4 Hb_009557_070 0.0660786666 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000056_200 0.0667530924 - - 40S ribosomal S9-2 -like protein [Gossypium arboreum]
6 Hb_096563_010 0.068267617 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Prunus mume]
7 Hb_000465_460 0.0690540272 - - PREDICTED: U3 small nucleolar RNA-associated protein 25 [Jatropha curcas]
8 Hb_001226_160 0.0690851012 - - PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform X1 [Jatropha curcas]
9 Hb_000093_160 0.0701012732 - - PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X1 [Jatropha curcas]
10 Hb_002660_080 0.0718654278 - - 60S ribosomal protein L12A [Hevea brasiliensis]
11 Hb_002226_070 0.0719585348 - - PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Jatropha curcas]
12 Hb_001489_060 0.0750277497 - - PREDICTED: uncharacterized protein LOC105649778 isoform X2 [Jatropha curcas]
13 Hb_002701_020 0.076231372 - - PREDICTED: transcription factor BIM2 [Jatropha curcas]
14 Hb_000243_030 0.0775336573 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
15 Hb_001358_030 0.077635739 - - PREDICTED: 40S ribosomal protein S3-3-like [Populus euphratica]
16 Hb_004116_060 0.0779928314 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
17 Hb_000120_790 0.078164593 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Jatropha curcas]
18 Hb_002609_020 0.0787232668 - - PREDICTED: phosphatidylinositol N-acetylglucosaminyltransferase subunit P-like [Jatropha curcas]
19 Hb_000227_080 0.0791695081 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003428_030 0.0798548074 - - tRNA, putative [Ricinus communis]

Gene co-expression network

sample Hb_003929_250 Hb_003929_250 Hb_000340_300 Hb_000340_300 Hb_003929_250--Hb_000340_300 Hb_000920_180 Hb_000920_180 Hb_003929_250--Hb_000920_180 Hb_009557_070 Hb_009557_070 Hb_003929_250--Hb_009557_070 Hb_000056_200 Hb_000056_200 Hb_003929_250--Hb_000056_200 Hb_096563_010 Hb_096563_010 Hb_003929_250--Hb_096563_010 Hb_000465_460 Hb_000465_460 Hb_003929_250--Hb_000465_460 Hb_001195_760 Hb_001195_760 Hb_000340_300--Hb_001195_760 Hb_002411_170 Hb_002411_170 Hb_000340_300--Hb_002411_170 Hb_012022_160 Hb_012022_160 Hb_000340_300--Hb_012022_160 Hb_000243_030 Hb_000243_030 Hb_000340_300--Hb_000243_030 Hb_000340_300--Hb_000920_180 Hb_000920_180--Hb_000056_200 Hb_000656_400 Hb_000656_400 Hb_000920_180--Hb_000656_400 Hb_000120_790 Hb_000120_790 Hb_000920_180--Hb_000120_790 Hb_118707_030 Hb_118707_030 Hb_000920_180--Hb_118707_030 Hb_005993_040 Hb_005993_040 Hb_000920_180--Hb_005993_040 Hb_000329_030 Hb_000329_030 Hb_009557_070--Hb_000329_030 Hb_000045_090 Hb_000045_090 Hb_009557_070--Hb_000045_090 Hb_143398_010 Hb_143398_010 Hb_009557_070--Hb_143398_010 Hb_007416_280 Hb_007416_280 Hb_009557_070--Hb_007416_280 Hb_003175_010 Hb_003175_010 Hb_009557_070--Hb_003175_010 Hb_001821_010 Hb_001821_010 Hb_000056_200--Hb_001821_010 Hb_003050_080 Hb_003050_080 Hb_000056_200--Hb_003050_080 Hb_000056_200--Hb_000243_030 Hb_063716_050 Hb_063716_050 Hb_000056_200--Hb_063716_050 Hb_002044_080 Hb_002044_080 Hb_000056_200--Hb_002044_080 Hb_000661_250 Hb_000661_250 Hb_096563_010--Hb_000661_250 Hb_003010_030 Hb_003010_030 Hb_096563_010--Hb_003010_030 Hb_001301_160 Hb_001301_160 Hb_096563_010--Hb_001301_160 Hb_001259_090 Hb_001259_090 Hb_096563_010--Hb_001259_090 Hb_000059_330 Hb_000059_330 Hb_096563_010--Hb_000059_330 Hb_000210_180 Hb_000210_180 Hb_096563_010--Hb_000210_180 Hb_058999_020 Hb_058999_020 Hb_000465_460--Hb_058999_020 Hb_000317_240 Hb_000317_240 Hb_000465_460--Hb_000317_240 Hb_004931_070 Hb_004931_070 Hb_000465_460--Hb_004931_070 Hb_001242_060 Hb_001242_060 Hb_000465_460--Hb_001242_060 Hb_001758_100 Hb_001758_100 Hb_000465_460--Hb_001758_100 Hb_001157_040 Hb_001157_040 Hb_000465_460--Hb_001157_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.1764 11.5534 11.6177 11.0722 19.0236 23.5919
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.4392 28.0819 15.6121 9.81983 7.37127

CAGE analysis