Hb_003929_280

Information

Type transcription factor
Description TF Family: CAMTA
Location Contig3929: 180377-189451
Sequence    

Annotation

kegg
ID rcu:RCOM_1002900
description calmodulin-binding transcription activator (camta), plants, putative
nr
ID XP_002519300.1
description calmodulin-binding transcription activator (camta), plants, putative [Ricinus communis]
swissprot
ID Q6NPP4
description Calmodulin-binding transcription activator 2 OS=Arabidopsis thaliana GN=CMTA2 PE=1 SV=1
trembl
ID B9RZY1
description Calmodulin-binding transcription activator (Camta), plants, putative OS=Ricinus communis GN=RCOM_1002900 PE=4 SV=1
Gene Ontology
ID GO:0005634
description calmodulin-binding transcription activator 3-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39389: 176855-179393 , PASA_asmbl_39392: 180391-189356 , PASA_asmbl_39393: 180665-189356 , PASA_asmbl_39394: 184774-189356
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003929_280 0.0 transcription factor TF Family: CAMTA calmodulin-binding transcription activator (camta), plants, putative [Ricinus communis]
2 Hb_004236_050 0.040803614 - - PREDICTED: nipped-B-like protein A [Jatropha curcas]
3 Hb_004837_180 0.0497620481 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
4 Hb_003927_040 0.0522026931 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
5 Hb_012384_030 0.0587314647 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L5-like [Jatropha curcas]
6 Hb_000803_070 0.0626942493 - - PREDICTED: protein TRAUCO [Jatropha curcas]
7 Hb_002217_110 0.0635029492 - - PREDICTED: craniofacial development protein 1 [Jatropha curcas]
8 Hb_001751_140 0.0640679855 - - PREDICTED: uncharacterized protein LOC105648510 isoform X1 [Jatropha curcas]
9 Hb_000645_170 0.0643651841 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005489_020 0.0649898664 - - conserved hypothetical protein [Ricinus communis]
11 Hb_012194_030 0.0653383078 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
12 Hb_005653_090 0.0670349276 - - PREDICTED: protein HIRA isoform X1 [Jatropha curcas]
13 Hb_012305_030 0.0677163472 - - hypothetical protein JCGZ_18979 [Jatropha curcas]
14 Hb_000172_430 0.0677237937 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000861_080 0.069128554 - - PREDICTED: protein ELC-like [Jatropha curcas]
16 Hb_000329_370 0.0700221836 - - hypothetical protein JCGZ_14571 [Jatropha curcas]
17 Hb_002085_030 0.0704097822 - - PREDICTED: protein CHROMATIN REMODELING 4 isoform X2 [Jatropha curcas]
18 Hb_000339_040 0.070926266 - - PREDICTED: SAP30-binding protein isoform X2 [Jatropha curcas]
19 Hb_001227_030 0.0718624277 - - PREDICTED: transcription initiation factor TFIID subunit 2 isoform X1 [Jatropha curcas]
20 Hb_007590_020 0.0723602361 - - PREDICTED: protein DAMAGED DNA-BINDING 2 [Jatropha curcas]

Gene co-expression network

sample Hb_003929_280 Hb_003929_280 Hb_004236_050 Hb_004236_050 Hb_003929_280--Hb_004236_050 Hb_004837_180 Hb_004837_180 Hb_003929_280--Hb_004837_180 Hb_003927_040 Hb_003927_040 Hb_003929_280--Hb_003927_040 Hb_012384_030 Hb_012384_030 Hb_003929_280--Hb_012384_030 Hb_000803_070 Hb_000803_070 Hb_003929_280--Hb_000803_070 Hb_002217_110 Hb_002217_110 Hb_003929_280--Hb_002217_110 Hb_004236_050--Hb_004837_180 Hb_000645_170 Hb_000645_170 Hb_004236_050--Hb_000645_170 Hb_004236_050--Hb_003927_040 Hb_007590_020 Hb_007590_020 Hb_004236_050--Hb_007590_020 Hb_012305_030 Hb_012305_030 Hb_004236_050--Hb_012305_030 Hb_005867_070 Hb_005867_070 Hb_004837_180--Hb_005867_070 Hb_004837_180--Hb_007590_020 Hb_001225_040 Hb_001225_040 Hb_004837_180--Hb_001225_040 Hb_004837_180--Hb_002217_110 Hb_001751_140 Hb_001751_140 Hb_003927_040--Hb_001751_140 Hb_003927_040--Hb_000645_170 Hb_060094_020 Hb_060094_020 Hb_003927_040--Hb_060094_020 Hb_008568_020 Hb_008568_020 Hb_003927_040--Hb_008568_020 Hb_140049_040 Hb_140049_040 Hb_003927_040--Hb_140049_040 Hb_000402_120 Hb_000402_120 Hb_012384_030--Hb_000402_120 Hb_001776_060 Hb_001776_060 Hb_012384_030--Hb_001776_060 Hb_000866_410 Hb_000866_410 Hb_012384_030--Hb_000866_410 Hb_012384_030--Hb_002217_110 Hb_012384_030--Hb_003927_040 Hb_000861_080 Hb_000861_080 Hb_000803_070--Hb_000861_080 Hb_001728_050 Hb_001728_050 Hb_000803_070--Hb_001728_050 Hb_032264_060 Hb_032264_060 Hb_000803_070--Hb_032264_060 Hb_000803_070--Hb_001751_140 Hb_000803_070--Hb_003927_040 Hb_000260_680 Hb_000260_680 Hb_002217_110--Hb_000260_680 Hb_001456_060 Hb_001456_060 Hb_002217_110--Hb_001456_060 Hb_002217_110--Hb_001776_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.1685 14.1728 11.7332 7.17572 9.02907 10.1545
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.26862 10.3376 7.32085 6.94903 10.4665

CAGE analysis