Hb_003935_020

Information

Type -
Description -
Location Contig3935: 7452-9776
Sequence    

Annotation

kegg
ID pmum:103334272
description protein CURVATURE THYLAKOID 1D, chloroplastic
nr
ID XP_012081646.1
description PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061DHP3
description Uncharacterized protein isoform 3 OS=Theobroma cacao GN=TCM_001002 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39404: 7678-9554 , PASA_asmbl_39405: 7772-9194
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003935_020 0.0 - - PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_000959_210 0.0313782213 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 27 [Jatropha curcas]
3 Hb_014109_040 0.0722699677 - - PREDICTED: probable folylpolyglutamate synthase [Jatropha curcas]
4 Hb_004093_090 0.0724175106 - - PREDICTED: uncharacterized protein LOC105633550 [Jatropha curcas]
5 Hb_004032_430 0.0731779467 - - PREDICTED: uncharacterized protein LOC105635169 [Jatropha curcas]
6 Hb_120410_010 0.07514966 - - PREDICTED: vesicle-associated membrane protein 727-like [Solanum tuberosum]
7 Hb_002652_030 0.0755761 - - PREDICTED: U3 small nucleolar RNA-interacting protein 2-like [Jatropha curcas]
8 Hb_000610_010 0.0766979931 - - PREDICTED: SKP1-like protein 1B [Musa acuminata subsp. malaccensis]
9 Hb_007576_080 0.0767764328 - - PREDICTED: uncharacterized protein LOC105643972 [Jatropha curcas]
10 Hb_002234_140 0.0774315442 - - DNA-directed RNA polymerase II family protein [Populus trichocarpa]
11 Hb_000563_230 0.0774539331 - - phospholipase d zeta, putative [Ricinus communis]
12 Hb_000286_070 0.0779507177 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
13 Hb_000009_530 0.0789681521 - - PREDICTED: uncharacterized protein LOC105639628 [Jatropha curcas]
14 Hb_004116_060 0.0820149612 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
15 Hb_027472_040 0.0820361022 - - SKP1 [Hevea brasiliensis]
16 Hb_001635_180 0.0826414048 - - PREDICTED: F-box/FBD/LRR-repeat protein At5g53840-like [Jatropha curcas]
17 Hb_008453_140 0.0826696854 - - PREDICTED: SKP1-like protein 1B [Jatropha curcas]
18 Hb_001329_290 0.0830310554 - - PREDICTED: uncharacterized protein LOC105642699 [Jatropha curcas]
19 Hb_003125_120 0.084968599 - - PREDICTED: TITAN-like protein [Jatropha curcas]
20 Hb_002585_040 0.0852453957 - - PREDICTED: cell division control protein 48 homolog B [Jatropha curcas]

Gene co-expression network

sample Hb_003935_020 Hb_003935_020 Hb_000959_210 Hb_000959_210 Hb_003935_020--Hb_000959_210 Hb_014109_040 Hb_014109_040 Hb_003935_020--Hb_014109_040 Hb_004093_090 Hb_004093_090 Hb_003935_020--Hb_004093_090 Hb_004032_430 Hb_004032_430 Hb_003935_020--Hb_004032_430 Hb_120410_010 Hb_120410_010 Hb_003935_020--Hb_120410_010 Hb_002652_030 Hb_002652_030 Hb_003935_020--Hb_002652_030 Hb_000959_210--Hb_002652_030 Hb_000959_210--Hb_120410_010 Hb_000959_210--Hb_004032_430 Hb_000959_210--Hb_004093_090 Hb_002530_030 Hb_002530_030 Hb_000959_210--Hb_002530_030 Hb_000589_120 Hb_000589_120 Hb_014109_040--Hb_000589_120 Hb_003125_120 Hb_003125_120 Hb_014109_040--Hb_003125_120 Hb_007576_080 Hb_007576_080 Hb_014109_040--Hb_007576_080 Hb_000563_230 Hb_000563_230 Hb_014109_040--Hb_000563_230 Hb_000334_280 Hb_000334_280 Hb_014109_040--Hb_000334_280 Hb_000610_010 Hb_000610_010 Hb_004093_090--Hb_000610_010 Hb_005588_030 Hb_005588_030 Hb_004093_090--Hb_005588_030 Hb_004093_090--Hb_120410_010 Hb_000362_200 Hb_000362_200 Hb_004093_090--Hb_000362_200 Hb_000009_530 Hb_000009_530 Hb_004093_090--Hb_000009_530 Hb_004310_150 Hb_004310_150 Hb_004032_430--Hb_004310_150 Hb_000275_170 Hb_000275_170 Hb_004032_430--Hb_000275_170 Hb_010068_040 Hb_010068_040 Hb_004032_430--Hb_010068_040 Hb_011224_060 Hb_011224_060 Hb_004032_430--Hb_011224_060 Hb_008453_140 Hb_008453_140 Hb_120410_010--Hb_008453_140 Hb_004116_060 Hb_004116_060 Hb_120410_010--Hb_004116_060 Hb_001142_030 Hb_001142_030 Hb_120410_010--Hb_001142_030 Hb_120410_010--Hb_002530_030 Hb_002740_030 Hb_002740_030 Hb_120410_010--Hb_002740_030 Hb_010381_090 Hb_010381_090 Hb_120410_010--Hb_010381_090 Hb_001089_110 Hb_001089_110 Hb_002652_030--Hb_001089_110 Hb_000696_230 Hb_000696_230 Hb_002652_030--Hb_000696_230 Hb_164544_010 Hb_164544_010 Hb_002652_030--Hb_164544_010 Hb_002175_030 Hb_002175_030 Hb_002652_030--Hb_002175_030 Hb_002652_030--Hb_008453_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.7439 10.4861 12.429 8.42813 14.8487 11.6823
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.71241 22.5743 7.30257 9.74063 7.03368

CAGE analysis