Hb_003935_030

Information

Type -
Description -
Location Contig3935: 24137-26791
Sequence    

Annotation

kegg
ID aly:ARALYDRAFT_496774
description hypothetical protein
nr
ID XP_012081645.1
description PREDICTED: 14-3-3-like protein GF14 kappa isoform X2 [Jatropha curcas]
swissprot
ID P48348
description 14-3-3-like protein GF14 kappa OS=Arabidopsis thaliana GN=GRF8 PE=1 SV=2
trembl
ID A0A067KD62
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18684 PE=3 SV=1
Gene Ontology
ID GO:0005634
description 14-3-3-like protein gf14 kappa

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39406: 23564-26584 , PASA_asmbl_39407: 23266-26661
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003935_030 0.0 - - PREDICTED: 14-3-3-like protein GF14 kappa isoform X2 [Jatropha curcas]
2 Hb_005494_020 0.0652751538 - - PREDICTED: transmembrane protein 184 homolog DDB_G0279555 [Jatropha curcas]
3 Hb_003299_070 0.0653981136 - - AMP deaminase [Theobroma cacao]
4 Hb_000567_010 0.0664172149 - - PREDICTED: uncharacterized protein LOC105631110 [Jatropha curcas]
5 Hb_003428_070 0.0665584205 - - DEAD-box ATP-dependent RNA helicase 46 -like protein [Gossypium arboreum]
6 Hb_002304_090 0.066888524 - - PREDICTED: probable ATP-dependent RNA helicase DHX35 isoform X1 [Jatropha curcas]
7 Hb_000768_110 0.0669747612 - - PREDICTED: chromo domain-containing protein LHP1 isoform X1 [Jatropha curcas]
8 Hb_185679_010 0.0672516113 - - serine/threonine-protein kinase rio2, putative [Ricinus communis]
9 Hb_000510_310 0.0688216159 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like [Jatropha curcas]
10 Hb_006252_020 0.070893077 - - PREDICTED: SET and MYND domain-containing protein 4 isoform X2 [Jatropha curcas]
11 Hb_005914_060 0.0727145115 - - PREDICTED: splicing factor U2af large subunit A [Jatropha curcas]
12 Hb_002163_010 0.0745714218 - - PREDICTED: UBA and UBX domain-containing protein At4g15410 [Jatropha curcas]
13 Hb_000743_040 0.0759049936 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
14 Hb_002042_140 0.0768087727 - - PREDICTED: uncharacterized protein LOC105647570 [Jatropha curcas]
15 Hb_008159_020 0.0773423081 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
16 Hb_006586_050 0.0779681636 - - PREDICTED: probable protein phosphatase 2C 39 [Jatropha curcas]
17 Hb_063716_080 0.0784601882 - - DNA-directed RNA polymerase III subunit F, putative [Ricinus communis]
18 Hb_000002_040 0.078579673 - - hypothetical protein JCGZ_01511 [Jatropha curcas]
19 Hb_008695_120 0.0786861032 transcription factor TF Family: C2H2 PREDICTED: MYST-like histone acetyltransferase 2 [Jatropha curcas]
20 Hb_000136_090 0.0787830811 - - programmed cell death protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_003935_030 Hb_003935_030 Hb_005494_020 Hb_005494_020 Hb_003935_030--Hb_005494_020 Hb_003299_070 Hb_003299_070 Hb_003935_030--Hb_003299_070 Hb_000567_010 Hb_000567_010 Hb_003935_030--Hb_000567_010 Hb_003428_070 Hb_003428_070 Hb_003935_030--Hb_003428_070 Hb_002304_090 Hb_002304_090 Hb_003935_030--Hb_002304_090 Hb_000768_110 Hb_000768_110 Hb_003935_030--Hb_000768_110 Hb_005494_020--Hb_000567_010 Hb_029142_010 Hb_029142_010 Hb_005494_020--Hb_029142_010 Hb_002960_160 Hb_002960_160 Hb_005494_020--Hb_002960_160 Hb_005494_020--Hb_003428_070 Hb_000347_130 Hb_000347_130 Hb_005494_020--Hb_000347_130 Hb_001454_320 Hb_001454_320 Hb_003299_070--Hb_001454_320 Hb_185679_010 Hb_185679_010 Hb_003299_070--Hb_185679_010 Hb_000109_100 Hb_000109_100 Hb_003299_070--Hb_000109_100 Hb_002163_010 Hb_002163_010 Hb_003299_070--Hb_002163_010 Hb_010695_020 Hb_010695_020 Hb_003299_070--Hb_010695_020 Hb_003124_130 Hb_003124_130 Hb_000567_010--Hb_003124_130 Hb_010193_050 Hb_010193_050 Hb_000567_010--Hb_010193_050 Hb_147737_010 Hb_147737_010 Hb_000567_010--Hb_147737_010 Hb_000567_010--Hb_000768_110 Hb_000331_190 Hb_000331_190 Hb_000567_010--Hb_000331_190 Hb_000567_050 Hb_000567_050 Hb_003428_070--Hb_000567_050 Hb_016898_010 Hb_016898_010 Hb_003428_070--Hb_016898_010 Hb_000101_240 Hb_000101_240 Hb_003428_070--Hb_000101_240 Hb_000743_040 Hb_000743_040 Hb_003428_070--Hb_000743_040 Hb_000820_170 Hb_000820_170 Hb_003428_070--Hb_000820_170 Hb_000173_510 Hb_000173_510 Hb_003428_070--Hb_000173_510 Hb_001172_010 Hb_001172_010 Hb_002304_090--Hb_001172_010 Hb_000538_100 Hb_000538_100 Hb_002304_090--Hb_000538_100 Hb_009627_010 Hb_009627_010 Hb_002304_090--Hb_009627_010 Hb_007188_070 Hb_007188_070 Hb_002304_090--Hb_007188_070 Hb_000510_310 Hb_000510_310 Hb_002304_090--Hb_000510_310 Hb_008159_020 Hb_008159_020 Hb_000768_110--Hb_008159_020 Hb_000160_040 Hb_000160_040 Hb_000768_110--Hb_000160_040 Hb_000768_110--Hb_010193_050 Hb_005914_060 Hb_005914_060 Hb_000768_110--Hb_005914_060 Hb_000768_110--Hb_000173_510
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
143.451 154.033 61.6316 64.0149 170.264 212.599
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
115.841 75.5999 77.6403 109.996 51.789

CAGE analysis