Hb_003935_040

Information

Type transcription factor
Description TF Family: MIKC
Location Contig3935: 36246-42940
Sequence    

Annotation

kegg
ID vvi:100251508
description MADS-box protein SVP
nr
ID XP_012081656.1
description PREDICTED: MADS-box protein SVP [Jatropha curcas]
swissprot
ID Q9FVC1
description MADS-box protein SVP OS=Arabidopsis thaliana GN=SVP PE=1 SV=1
trembl
ID A0A067KD68
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18694 PE=4 SV=1
Gene Ontology
ID GO:0005634
description mads-box protein svp

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39409: 36648-42953
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003935_040 0.0 transcription factor TF Family: MIKC PREDICTED: MADS-box protein SVP [Jatropha curcas]
2 Hb_000162_190 0.0759100258 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
3 Hb_000345_230 0.0833949751 - - -
4 Hb_000310_110 0.0890527276 - - PREDICTED: probable trehalose-phosphate phosphatase F isoform X1 [Jatropha curcas]
5 Hb_000020_050 0.0902390763 - - PREDICTED: expansin-A6 [Jatropha curcas]
6 Hb_015934_080 0.0949875434 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Jatropha curcas]
7 Hb_009189_100 0.0970960673 - - PREDICTED: patellin-6 [Jatropha curcas]
8 Hb_000003_750 0.097507381 - - PREDICTED: lysM domain receptor-like kinase 3 [Jatropha curcas]
9 Hb_009252_080 0.0979426784 - - Polygalacturonase-1 non-catalytic subunit beta precursor, putative [Ricinus communis]
10 Hb_000522_160 0.0993328311 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
11 Hb_025787_020 0.0998563973 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
12 Hb_002292_080 0.1009879063 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
13 Hb_000735_020 0.1012139298 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
14 Hb_000375_260 0.1075600109 - - cyanohydrin UDP-glucosyltransferase UGT85K4 [Manihot esculenta]
15 Hb_001709_090 0.1078352015 - - PREDICTED: uncharacterized protein At3g28850-like [Jatropha curcas]
16 Hb_012518_080 0.1085655265 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11-like [Jatropha curcas]
17 Hb_006693_010 0.1092705421 - - PREDICTED: uncharacterized protein LOC105628875 [Jatropha curcas]
18 Hb_003992_020 0.1092706704 - - PREDICTED: phosphatidylcholine:diacylglycerol cholinephosphotransferase 1-like [Jatropha curcas]
19 Hb_001085_190 0.1102431553 transcription factor TF Family: ERF AP2 domain-containing transcription factor family protein [Populus trichocarpa]
20 Hb_001159_090 0.1105662593 - - PREDICTED: methylsterol monooxygenase 1-1-like [Jatropha curcas]

Gene co-expression network

sample Hb_003935_040 Hb_003935_040 Hb_000162_190 Hb_000162_190 Hb_003935_040--Hb_000162_190 Hb_000345_230 Hb_000345_230 Hb_003935_040--Hb_000345_230 Hb_000310_110 Hb_000310_110 Hb_003935_040--Hb_000310_110 Hb_000020_050 Hb_000020_050 Hb_003935_040--Hb_000020_050 Hb_015934_080 Hb_015934_080 Hb_003935_040--Hb_015934_080 Hb_009189_100 Hb_009189_100 Hb_003935_040--Hb_009189_100 Hb_025787_020 Hb_025787_020 Hb_000162_190--Hb_025787_020 Hb_009252_080 Hb_009252_080 Hb_000162_190--Hb_009252_080 Hb_001141_440 Hb_001141_440 Hb_000162_190--Hb_001141_440 Hb_043552_010 Hb_043552_010 Hb_000162_190--Hb_043552_010 Hb_000162_190--Hb_000310_110 Hb_159809_040 Hb_159809_040 Hb_000345_230--Hb_159809_040 Hb_000345_230--Hb_009252_080 Hb_000345_230--Hb_001141_440 Hb_001709_090 Hb_001709_090 Hb_000345_230--Hb_001709_090 Hb_000522_160 Hb_000522_160 Hb_000345_230--Hb_000522_160 Hb_000310_110--Hb_009189_100 Hb_032260_060 Hb_032260_060 Hb_000310_110--Hb_032260_060 Hb_007290_050 Hb_007290_050 Hb_000310_110--Hb_007290_050 Hb_000310_110--Hb_000345_230 Hb_001971_040 Hb_001971_040 Hb_000020_050--Hb_001971_040 Hb_006693_010 Hb_006693_010 Hb_000020_050--Hb_006693_010 Hb_000020_050--Hb_000345_230 Hb_001348_100 Hb_001348_100 Hb_000020_050--Hb_001348_100 Hb_000020_050--Hb_001141_440 Hb_015934_080--Hb_009189_100 Hb_002171_020 Hb_002171_020 Hb_015934_080--Hb_002171_020 Hb_033312_070 Hb_033312_070 Hb_015934_080--Hb_033312_070 Hb_015934_080--Hb_007290_050 Hb_015934_080--Hb_000162_190 Hb_009189_100--Hb_002171_020 Hb_000329_720 Hb_000329_720 Hb_009189_100--Hb_000329_720 Hb_009189_100--Hb_007290_050 Hb_000365_430 Hb_000365_430 Hb_009189_100--Hb_000365_430
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.28263 2.95573 19.5688 27.5612 0.152841 0.0664188
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.158545 0.0831271 0.152661 4.86802 6.10699

CAGE analysis