Hb_003935_070

Information

Type -
Description -
Location Contig3935: 68557-73518
Sequence    

Annotation

kegg
ID pop:POPTR_0007s14280g
description POPTRDRAFT_1083864; hypothetical protein
nr
ID XP_012081661.1
description PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
swissprot
ID Q8W486
description Uncharacterized protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=2 SV=1
trembl
ID A0A067K418
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18698 PE=4 SV=1
Gene Ontology
ID GO:0016757
description o-fucosyltransferase family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39413: 68891-73602
cDNA
(Sanger)
(ID:Location)		 022_N16.ab1: 68967-70436

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003935_070 0.0 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
2 Hb_000805_010 0.0578995774 - - PREDICTED: uncharacterized protein LOC105629931 [Jatropha curcas]
3 Hb_000649_040 0.1045571068 - - PREDICTED: dynamin-related protein 1C [Jatropha curcas]
4 Hb_000108_150 0.1112781849 - - alpha/beta hydrolase, putative [Ricinus communis]
5 Hb_015141_010 0.1144312189 - - gamma-tocopherol methyltransferase [Hevea brasiliensis]
6 Hb_000749_020 0.1182261433 - - Nucleotide-diphospho-sugar transferases superfamily protein isoform 1 [Theobroma cacao]
7 Hb_002759_220 0.1203440757 - - altered response to gravity (arg1), plant, putative [Ricinus communis]
8 Hb_002817_040 0.1215396066 - - PREDICTED: kinesin-II 85 kDa subunit isoform X1 [Jatropha curcas]
9 Hb_000612_090 0.1316819841 - - PREDICTED: mitochondrial carnitine/acylcarnitine carrier-like protein [Jatropha curcas]
10 Hb_000395_010 0.1330906219 - - alpha/beta hydrolase domain containing protein 1,3, putative [Ricinus communis]
11 Hb_003226_250 0.1353093544 - - PREDICTED: UDP-glucuronic acid decarboxylase 2 [Jatropha curcas]
12 Hb_032631_030 0.1356966752 - - phosphatidic acid phosphatase, putative [Ricinus communis]
13 Hb_158092_100 0.1361857105 - - PREDICTED: uncharacterized protein LOC105647301 [Jatropha curcas]
14 Hb_002028_180 0.1388037719 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
15 Hb_000390_210 0.1416366957 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
16 Hb_000061_250 0.1418522682 - - hypothetical protein JCGZ_11665 [Jatropha curcas]
17 Hb_001369_010 0.1419075441 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
18 Hb_002182_020 0.1435807376 - - Thylakoid lumenal 17.4 kDa protein, chloroplast precursor, putative [Ricinus communis]
19 Hb_000684_200 0.1438312391 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
20 Hb_005563_010 0.144537117 - - PREDICTED: kinesin-II 85 kDa subunit isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003935_070 Hb_003935_070 Hb_000805_010 Hb_000805_010 Hb_003935_070--Hb_000805_010 Hb_000649_040 Hb_000649_040 Hb_003935_070--Hb_000649_040 Hb_000108_150 Hb_000108_150 Hb_003935_070--Hb_000108_150 Hb_015141_010 Hb_015141_010 Hb_003935_070--Hb_015141_010 Hb_000749_020 Hb_000749_020 Hb_003935_070--Hb_000749_020 Hb_002759_220 Hb_002759_220 Hb_003935_070--Hb_002759_220 Hb_000805_010--Hb_015141_010 Hb_000805_010--Hb_002759_220 Hb_002817_040 Hb_002817_040 Hb_000805_010--Hb_002817_040 Hb_002235_110 Hb_002235_110 Hb_000805_010--Hb_002235_110 Hb_000395_010 Hb_000395_010 Hb_000805_010--Hb_000395_010 Hb_000107_350 Hb_000107_350 Hb_000649_040--Hb_000107_350 Hb_000808_150 Hb_000808_150 Hb_000649_040--Hb_000808_150 Hb_000077_310 Hb_000077_310 Hb_000649_040--Hb_000077_310 Hb_000649_040--Hb_000749_020 Hb_000649_040--Hb_000805_010 Hb_000061_250 Hb_000061_250 Hb_000108_150--Hb_000061_250 Hb_000045_050 Hb_000045_050 Hb_000108_150--Hb_000045_050 Hb_071079_020 Hb_071079_020 Hb_000108_150--Hb_071079_020 Hb_005181_120 Hb_005181_120 Hb_000108_150--Hb_005181_120 Hb_000264_280 Hb_000264_280 Hb_000108_150--Hb_000264_280 Hb_007904_060 Hb_007904_060 Hb_000108_150--Hb_007904_060 Hb_022137_050 Hb_022137_050 Hb_015141_010--Hb_022137_050 Hb_000352_280 Hb_000352_280 Hb_015141_010--Hb_000352_280 Hb_074197_030 Hb_074197_030 Hb_015141_010--Hb_074197_030 Hb_172426_060 Hb_172426_060 Hb_015141_010--Hb_172426_060 Hb_000749_020--Hb_002817_040 Hb_000086_210 Hb_000086_210 Hb_000749_020--Hb_000086_210 Hb_000749_020--Hb_000808_150 Hb_002759_120 Hb_002759_120 Hb_000749_020--Hb_002759_120 Hb_005074_040 Hb_005074_040 Hb_000749_020--Hb_005074_040 Hb_000749_020--Hb_007904_060 Hb_003226_200 Hb_003226_200 Hb_002759_220--Hb_003226_200 Hb_000193_340 Hb_000193_340 Hb_002759_220--Hb_000193_340 Hb_003226_250 Hb_003226_250 Hb_002759_220--Hb_003226_250 Hb_161396_010 Hb_161396_010 Hb_002759_220--Hb_161396_010 Hb_006153_160 Hb_006153_160 Hb_002759_220--Hb_006153_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.3186 8.13901 57.9488 71.6442 2.83807 5.53826
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.837 7.14786 7.99001 11.3039 101.574

CAGE analysis