Hb_003935_080

Information

Type -
Description -
Location Contig3935: 73557-83188
Sequence    

Annotation

kegg
ID rcu:RCOM_1054840
description hypothetical protein
nr
ID XP_012081663.1
description PREDICTED: mechanosensitive ion channel protein 2, chloroplastic [Jatropha curcas]
swissprot
ID Q56X46
description Mechanosensitive ion channel protein 2, chloroplastic OS=Arabidopsis thaliana GN=MSL2 PE=2 SV=1
trembl
ID A0A067KD71
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18699 PE=4 SV=1
Gene Ontology
ID GO:0016020
description mechanosensitive ion channel protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 022_N16r.ab1: 72482-73598

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003935_080 0.0 - - PREDICTED: mechanosensitive ion channel protein 2, chloroplastic [Jatropha curcas]
2 Hb_005489_090 0.0694102082 - - PREDICTED: peptidyl-tRNA hydrolase ICT1, mitochondrial [Jatropha curcas]
3 Hb_000594_100 0.0737487611 - - PREDICTED: methionine aminopeptidase 1B, chloroplastic [Jatropha curcas]
4 Hb_010577_040 0.0779460003 - - PREDICTED: uncharacterized protein LOC105643738 [Jatropha curcas]
5 Hb_001124_180 0.0830367136 - - PREDICTED: uncharacterized protein LOC105171432 [Sesamum indicum]
6 Hb_001792_030 0.0964315593 - - PREDICTED: aminoacyl tRNA synthase complex-interacting multifunctional protein 1 [Jatropha curcas]
7 Hb_000866_050 0.1047139863 - - phosphate transporter [Manihot esculenta]
8 Hb_000042_290 0.1086521539 - - PREDICTED: uncharacterized protein LOC105632818 isoform X2 [Jatropha curcas]
9 Hb_001621_060 0.1119167943 - - PREDICTED: thylakoid lumenal 15 kDa protein 1, chloroplastic [Jatropha curcas]
10 Hb_000189_520 0.1121973203 - - PREDICTED: uncharacterized protein LOC105647658 [Jatropha curcas]
11 Hb_005725_220 0.1140161041 - - PREDICTED: uncharacterized protein LOC105630808 [Jatropha curcas]
12 Hb_000983_070 0.116011889 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000388_060 0.1177500735 - - fructokinase [Manihot esculenta]
14 Hb_000175_050 0.1189474001 - - -
15 Hb_020378_060 0.1192820338 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
16 Hb_000152_480 0.1200379187 - - PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Jatropha curcas]
17 Hb_001373_130 0.1226003546 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000723_290 0.1251737995 - - calcium lipid binding protein, putative [Ricinus communis]
19 Hb_001269_070 0.1298349849 - - double-stranded RNA binding protein, putative [Ricinus communis]
20 Hb_002078_300 0.1303367531 - - PREDICTED: uncharacterized protein LOC105644817 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003935_080 Hb_003935_080 Hb_005489_090 Hb_005489_090 Hb_003935_080--Hb_005489_090 Hb_000594_100 Hb_000594_100 Hb_003935_080--Hb_000594_100 Hb_010577_040 Hb_010577_040 Hb_003935_080--Hb_010577_040 Hb_001124_180 Hb_001124_180 Hb_003935_080--Hb_001124_180 Hb_001792_030 Hb_001792_030 Hb_003935_080--Hb_001792_030 Hb_000866_050 Hb_000866_050 Hb_003935_080--Hb_000866_050 Hb_005489_090--Hb_001124_180 Hb_005489_090--Hb_000594_100 Hb_005489_090--Hb_010577_040 Hb_005725_220 Hb_005725_220 Hb_005489_090--Hb_005725_220 Hb_005489_090--Hb_001792_030 Hb_001373_130 Hb_001373_130 Hb_000594_100--Hb_001373_130 Hb_000594_100--Hb_001124_180 Hb_000594_100--Hb_010577_040 Hb_000983_070 Hb_000983_070 Hb_000594_100--Hb_000983_070 Hb_000723_290 Hb_000723_290 Hb_010577_040--Hb_000723_290 Hb_001621_060 Hb_001621_060 Hb_010577_040--Hb_001621_060 Hb_020378_060 Hb_020378_060 Hb_010577_040--Hb_020378_060 Hb_001124_180--Hb_005725_220 Hb_000042_290 Hb_000042_290 Hb_001124_180--Hb_000042_290 Hb_000176_010 Hb_000176_010 Hb_001124_180--Hb_000176_010 Hb_000189_520 Hb_000189_520 Hb_001792_030--Hb_000189_520 Hb_001792_030--Hb_001621_060 Hb_000058_080 Hb_000058_080 Hb_001792_030--Hb_000058_080 Hb_001792_030--Hb_000594_100 Hb_000866_050--Hb_000058_080 Hb_000866_050--Hb_000189_520 Hb_011053_030 Hb_011053_030 Hb_000866_050--Hb_011053_030 Hb_183963_010 Hb_183963_010 Hb_000866_050--Hb_183963_010 Hb_000107_590 Hb_000107_590 Hb_000866_050--Hb_000107_590
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.24832 1.54053 9.86789 8.32241 0.873177 0.87355
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.18028 7.42778 5.06164 3.97546 23.875

CAGE analysis