Hb_003935_090

Information

Type -
Description -
Location Contig3935: 86415-89672
Sequence    

Annotation

kegg
ID rcu:RCOM_1054730
description ATP binding protein, putative
nr
ID XP_012081666.1
description PREDICTED: uncharacterized protein At4g38062 [Jatropha curcas]
swissprot
ID P0CB23
description Uncharacterized protein At4g38062 OS=Arabidopsis thaliana GN=At4g38062 PE=4 SV=1
trembl
ID A0A067K0N9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18701 PE=4 SV=1
Gene Ontology
ID GO:0005739
description bhlh family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39417: 87153-87718
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003935_090 0.0 - - PREDICTED: uncharacterized protein At4g38062 [Jatropha curcas]
2 Hb_007574_020 0.081788438 - - PREDICTED: uncharacterized protein LOC105638146 [Jatropha curcas]
3 Hb_002232_310 0.0913240293 - - PREDICTED: uncharacterized protein LOC105635987 [Jatropha curcas]
4 Hb_004109_100 0.1089588825 - - Interactor of constitutive active rops 1 isoform 1 [Theobroma cacao]
5 Hb_001755_040 0.1154962657 - - PREDICTED: cyclin-A2-4-like isoform X1 [Jatropha curcas]
6 Hb_012055_080 0.1168895985 - - PREDICTED: lysine-rich arabinogalactan protein 18-like [Jatropha curcas]
7 Hb_023344_100 0.1181518004 - - PREDICTED: subtilisin-like protease SBT1.2 [Jatropha curcas]
8 Hb_000002_430 0.1245466245 - - PREDICTED: FHA domain-containing protein At4g14490 [Populus euphratica]
9 Hb_002243_030 0.1266006742 - - PREDICTED: 65-kDa microtubule-associated protein 3-like isoform X1 [Jatropha curcas]
10 Hb_000265_100 0.1299827326 - - PREDICTED: uncharacterized protein LOC105643473 [Jatropha curcas]
11 Hb_003109_010 0.130294582 - - PREDICTED: kinesin-like protein KIN12B [Jatropha curcas]
12 Hb_012653_010 0.1305114373 - - PREDICTED: subtilisin-like protease SBT2.5 [Jatropha curcas]
13 Hb_001761_010 0.1318271831 - - PREDICTED: uncharacterized protein LOC105639282 [Jatropha curcas]
14 Hb_002170_060 0.1346544671 - - PREDICTED: mitogen-activated protein kinase-binding protein 1 [Jatropha curcas]
15 Hb_004218_050 0.1366645031 - - annexin [Manihot esculenta]
16 Hb_005568_140 0.1369861797 - - ATP binding protein, putative [Ricinus communis]
17 Hb_008643_220 0.1436448352 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 [Jatropha curcas]
18 Hb_024973_020 0.1439499194 - - Protein regulator of cytokinesis, putative [Ricinus communis]
19 Hb_000416_080 0.1510524667 - - Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase, putative [Ricinus communis]
20 Hb_002918_220 0.1514852254 - - PREDICTED: uncharacterized protein LOC105138896 [Populus euphratica]

Gene co-expression network

sample Hb_003935_090 Hb_003935_090 Hb_007574_020 Hb_007574_020 Hb_003935_090--Hb_007574_020 Hb_002232_310 Hb_002232_310 Hb_003935_090--Hb_002232_310 Hb_004109_100 Hb_004109_100 Hb_003935_090--Hb_004109_100 Hb_001755_040 Hb_001755_040 Hb_003935_090--Hb_001755_040 Hb_012055_080 Hb_012055_080 Hb_003935_090--Hb_012055_080 Hb_023344_100 Hb_023344_100 Hb_003935_090--Hb_023344_100 Hb_007574_020--Hb_004109_100 Hb_007574_020--Hb_002232_310 Hb_005568_140 Hb_005568_140 Hb_007574_020--Hb_005568_140 Hb_007574_020--Hb_001755_040 Hb_002243_030 Hb_002243_030 Hb_007574_020--Hb_002243_030 Hb_002232_310--Hb_001755_040 Hb_010705_040 Hb_010705_040 Hb_002232_310--Hb_010705_040 Hb_003109_010 Hb_003109_010 Hb_002232_310--Hb_003109_010 Hb_002232_310--Hb_004109_100 Hb_004109_100--Hb_005568_140 Hb_002918_220 Hb_002918_220 Hb_004109_100--Hb_002918_220 Hb_004109_100--Hb_002243_030 Hb_003777_260 Hb_003777_260 Hb_004109_100--Hb_003777_260 Hb_002170_060 Hb_002170_060 Hb_004109_100--Hb_002170_060 Hb_015299_040 Hb_015299_040 Hb_004109_100--Hb_015299_040 Hb_001755_040--Hb_004109_100 Hb_000936_030 Hb_000936_030 Hb_001755_040--Hb_000936_030 Hb_001755_040--Hb_010705_040 Hb_007952_050 Hb_007952_050 Hb_012055_080--Hb_007952_050 Hb_011033_010 Hb_011033_010 Hb_012055_080--Hb_011033_010 Hb_012055_080--Hb_007574_020 Hb_004218_050 Hb_004218_050 Hb_012055_080--Hb_004218_050 Hb_000925_150 Hb_000925_150 Hb_012055_080--Hb_000925_150 Hb_023344_100--Hb_002243_030 Hb_023344_100--Hb_015299_040 Hb_001357_160 Hb_001357_160 Hb_023344_100--Hb_001357_160 Hb_023344_100--Hb_004109_100 Hb_158845_010 Hb_158845_010 Hb_023344_100--Hb_158845_010 Hb_074240_030 Hb_074240_030 Hb_023344_100--Hb_074240_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.291959 0.354334 9.52597 2.70043 0.210663 0.210833
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0398791 0.0104608 0.0200371 0.472772 1.49754

CAGE analysis