Hb_003938_080

Information

Type -
Description -
Location Contig3938: 84974-88187
Sequence    

Annotation

kegg
ID rcu:RCOM_0463540
description kinesin light chain, putative
nr
ID XP_012085333.1
description PREDICTED: uncharacterized protein LOC105644554 [Jatropha curcas]
swissprot
ID A0JM23
description Nephrocystin-3 OS=Xenopus tropicalis GN=nphp3 PE=2 SV=2
trembl
ID A0A067K416
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17707 PE=4 SV=1
Gene Ontology
ID GO:0006457
description kinesin light

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39424: 84994-87297 , PASA_asmbl_39425: 87486-87870
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003938_080 0.0 - - PREDICTED: uncharacterized protein LOC105644554 [Jatropha curcas]
2 Hb_009411_010 0.0513564388 - - PREDICTED: uncharacterized protein LOC105645272 [Jatropha curcas]
3 Hb_003216_080 0.0590735563 - - PREDICTED: pentatricopeptide repeat-containing protein At5g65560-like [Jatropha curcas]
4 Hb_003544_100 0.0677040897 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Jatropha curcas]
5 Hb_000101_240 0.070399232 desease resistance Gene Name: NB-ARC putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
6 Hb_015884_030 0.0729015802 - - PREDICTED: uncharacterized protein LOC105647778 isoform X1 [Jatropha curcas]
7 Hb_000502_050 0.073999589 transcription factor TF Family: HSF Heat shock factor protein HSF8, putative [Ricinus communis]
8 Hb_001797_050 0.0747672204 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 3-like isoform X1 [Jatropha curcas]
9 Hb_004724_060 0.0753048124 - - PREDICTED: uncharacterized protein LOC105640155 isoform X1 [Jatropha curcas]
10 Hb_000034_040 0.077217036 - - PREDICTED: histidine--tRNA ligase [Jatropha curcas]
11 Hb_000195_020 0.0776699412 - - PREDICTED: pentatricopeptide repeat-containing protein At4g19191, mitochondrial [Jatropha curcas]
12 Hb_011139_030 0.0799931405 - - PREDICTED: E3 ubiquitin-protein ligase MBR2-like [Jatropha curcas]
13 Hb_012656_030 0.082642569 transcription factor TF Family: PHD PREDICTED: protein CHROMATIN REMODELING 4 isoform X1 [Jatropha curcas]
14 Hb_000072_220 0.0829643963 - - PREDICTED: pentatricopeptide repeat-containing protein At3g02490, mitochondrial [Jatropha curcas]
15 Hb_124315_020 0.08340603 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_000514_060 0.0840663251 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG isoform X1 [Jatropha curcas]
17 Hb_000820_170 0.0872650052 - - PREDICTED: THO complex subunit 4A [Jatropha curcas]
18 Hb_007108_030 0.0874399058 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_004155_010 0.0881576352 - - PREDICTED: la protein 1 [Jatropha curcas]
20 Hb_000878_010 0.0886645352 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g06400, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_003938_080 Hb_003938_080 Hb_009411_010 Hb_009411_010 Hb_003938_080--Hb_009411_010 Hb_003216_080 Hb_003216_080 Hb_003938_080--Hb_003216_080 Hb_003544_100 Hb_003544_100 Hb_003938_080--Hb_003544_100 Hb_000101_240 Hb_000101_240 Hb_003938_080--Hb_000101_240 Hb_015884_030 Hb_015884_030 Hb_003938_080--Hb_015884_030 Hb_000502_050 Hb_000502_050 Hb_003938_080--Hb_000502_050 Hb_009411_010--Hb_003544_100 Hb_009411_010--Hb_000101_240 Hb_001797_050 Hb_001797_050 Hb_009411_010--Hb_001797_050 Hb_048476_180 Hb_048476_180 Hb_009411_010--Hb_048476_180 Hb_009411_010--Hb_000502_050 Hb_003216_080--Hb_009411_010 Hb_001322_210 Hb_001322_210 Hb_003216_080--Hb_001322_210 Hb_003216_080--Hb_003544_100 Hb_000107_500 Hb_000107_500 Hb_003216_080--Hb_000107_500 Hb_001930_010 Hb_001930_010 Hb_003216_080--Hb_001930_010 Hb_001599_030 Hb_001599_030 Hb_003544_100--Hb_001599_030 Hb_006915_060 Hb_006915_060 Hb_003544_100--Hb_006915_060 Hb_000320_200 Hb_000320_200 Hb_003544_100--Hb_000320_200 Hb_016898_010 Hb_016898_010 Hb_000101_240--Hb_016898_010 Hb_003428_070 Hb_003428_070 Hb_000101_240--Hb_003428_070 Hb_000084_120 Hb_000084_120 Hb_000101_240--Hb_000084_120 Hb_000101_240--Hb_048476_180 Hb_003362_070 Hb_003362_070 Hb_000101_240--Hb_003362_070 Hb_000034_040 Hb_000034_040 Hb_015884_030--Hb_000034_040 Hb_015884_030--Hb_003544_100 Hb_015884_030--Hb_009411_010 Hb_000010_180 Hb_000010_180 Hb_015884_030--Hb_000010_180 Hb_015884_030--Hb_006915_060 Hb_003785_040 Hb_003785_040 Hb_000502_050--Hb_003785_040 Hb_010222_050 Hb_010222_050 Hb_000502_050--Hb_010222_050 Hb_005993_050 Hb_005993_050 Hb_000502_050--Hb_005993_050 Hb_000574_440 Hb_000574_440 Hb_000502_050--Hb_000574_440 Hb_009503_030 Hb_009503_030 Hb_000502_050--Hb_009503_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.3613 9.13591 4.60599 3.67378 11.7052 17.2089
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.52342 6.73812 10.8822 5.57962 8.58454

CAGE analysis