Hb_003938_090

Information

Type -
Description -
Location Contig3938: 90369-95274
Sequence    

Annotation

kegg
ID rcu:RCOM_0463550
description hypothetical protein
nr
ID XP_002532369.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q6C2F5
description Autophagy-related protein 9 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=ATG9 PE=3 SV=1
trembl
ID B9T2A0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0463550 PE=4 SV=1
Gene Ontology
ID GO:0044238
description autophagy-related protein 9-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003938_090 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_008847_030 0.0528215709 - - PREDICTED: TLD domain-containing protein 1 [Jatropha curcas]
3 Hb_007416_340 0.0568126294 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At4g31390, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_003647_140 0.0604544564 - - PREDICTED: uncharacterized protein LOC105646673 [Jatropha curcas]
5 Hb_001470_030 0.0608903551 - - PREDICTED: MORC family CW-type zinc finger protein 3 isoform X2 [Jatropha curcas]
6 Hb_000340_180 0.0615413609 - - PREDICTED: mitochondrial ubiquitin ligase activator of NFKB 1 [Jatropha curcas]
7 Hb_002641_060 0.062196145 - - prefoldin subunit, putative [Ricinus communis]
8 Hb_014834_150 0.0622679264 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 1, mitochondrial isoform X1 [Jatropha curcas]
9 Hb_000116_450 0.0637113653 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 1 [Jatropha curcas]
10 Hb_000220_010 0.0644161712 - - PREDICTED: uncharacterized protein LOC105630083 [Jatropha curcas]
11 Hb_001278_100 0.0648505147 - - PREDICTED: probable phosphopantothenoylcysteine decarboxylase [Jatropha curcas]
12 Hb_003416_010 0.0663388719 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 13 homolog B [Malus domestica]
13 Hb_000373_070 0.066832698 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X2 [Jatropha curcas]
14 Hb_001163_050 0.0679995093 - - PREDICTED: histone deacetylase 9 [Jatropha curcas]
15 Hb_000905_110 0.0694032337 - - arginine/serine rich splicing factor sf4/14, putative [Ricinus communis]
16 Hb_003125_120 0.0699738798 - - PREDICTED: TITAN-like protein [Jatropha curcas]
17 Hb_002986_100 0.0703706796 - - PREDICTED: uncharacterized protein LOC105639686 [Jatropha curcas]
18 Hb_006831_140 0.0705277864 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
19 Hb_189216_020 0.0714075782 - - PREDICTED: translin [Jatropha curcas]
20 Hb_000976_120 0.0715803782 - - PREDICTED: DNA polymerase zeta processivity subunit [Jatropha curcas]

Gene co-expression network

sample Hb_003938_090 Hb_003938_090 Hb_008847_030 Hb_008847_030 Hb_003938_090--Hb_008847_030 Hb_007416_340 Hb_007416_340 Hb_003938_090--Hb_007416_340 Hb_003647_140 Hb_003647_140 Hb_003938_090--Hb_003647_140 Hb_001470_030 Hb_001470_030 Hb_003938_090--Hb_001470_030 Hb_000340_180 Hb_000340_180 Hb_003938_090--Hb_000340_180 Hb_002641_060 Hb_002641_060 Hb_003938_090--Hb_002641_060 Hb_001021_150 Hb_001021_150 Hb_008847_030--Hb_001021_150 Hb_003416_010 Hb_003416_010 Hb_008847_030--Hb_003416_010 Hb_000905_110 Hb_000905_110 Hb_008847_030--Hb_000905_110 Hb_000621_010 Hb_000621_010 Hb_008847_030--Hb_000621_010 Hb_008847_030--Hb_002641_060 Hb_003125_120 Hb_003125_120 Hb_007416_340--Hb_003125_120 Hb_000484_030 Hb_000484_030 Hb_007416_340--Hb_000484_030 Hb_008453_140 Hb_008453_140 Hb_007416_340--Hb_008453_140 Hb_001946_400 Hb_001946_400 Hb_007416_340--Hb_001946_400 Hb_001922_150 Hb_001922_150 Hb_007416_340--Hb_001922_150 Hb_014834_150 Hb_014834_150 Hb_003647_140--Hb_014834_150 Hb_000373_050 Hb_000373_050 Hb_003647_140--Hb_000373_050 Hb_000976_120 Hb_000976_120 Hb_003647_140--Hb_000976_120 Hb_003513_010 Hb_003513_010 Hb_003647_140--Hb_003513_010 Hb_003647_140--Hb_001946_400 Hb_001030_020 Hb_001030_020 Hb_001470_030--Hb_001030_020 Hb_002078_350 Hb_002078_350 Hb_001470_030--Hb_002078_350 Hb_010423_030 Hb_010423_030 Hb_001470_030--Hb_010423_030 Hb_000152_500 Hb_000152_500 Hb_001470_030--Hb_000152_500 Hb_000373_070 Hb_000373_070 Hb_001470_030--Hb_000373_070 Hb_000035_180 Hb_000035_180 Hb_000340_180--Hb_000035_180 Hb_001278_100 Hb_001278_100 Hb_000340_180--Hb_001278_100 Hb_005496_140 Hb_005496_140 Hb_000340_180--Hb_005496_140 Hb_000003_230 Hb_000003_230 Hb_000340_180--Hb_000003_230 Hb_004058_030 Hb_004058_030 Hb_000340_180--Hb_004058_030 Hb_013575_010 Hb_013575_010 Hb_002641_060--Hb_013575_010 Hb_007878_010 Hb_007878_010 Hb_002641_060--Hb_007878_010 Hb_008616_050 Hb_008616_050 Hb_002641_060--Hb_008616_050 Hb_002641_060--Hb_003416_010 Hb_000375_350 Hb_000375_350 Hb_002641_060--Hb_000375_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.53579 3.3984 3.8681 3.74617 3.55607 3.87252
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.71404 5.53618 3.17363 2.99913 3.47985

CAGE analysis