Hb_003938_100

Information

Type -
Description -
Location Contig3938: 93293-97080
Sequence    

Annotation

kegg
ID rcu:RCOM_0824170
description hypothetical protein
nr
ID XP_002525845.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SIM6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0824170 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003938_100 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000243_050 0.0583950688 - - ADP-ribosylation factor, putative [Ricinus communis]
3 Hb_138667_010 0.0721729349 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
4 Hb_038190_030 0.0888240691 - - -
5 Hb_001301_070 0.0894415184 - - -
6 Hb_000280_120 0.0937383618 - - PREDICTED: uncharacterized protein LOC105643934 [Jatropha curcas]
7 Hb_002056_140 0.0999869197 - - -
8 Hb_028872_040 0.1036565174 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_000192_060 0.1037167125 - - -
10 Hb_007709_020 0.1118949926 - - PREDICTED: uncharacterized protein LOC105049010 [Elaeis guineensis]
11 Hb_151411_010 0.1183872986 - - -
12 Hb_168909_010 0.1195026191 - - PREDICTED: uncharacterized protein LOC105640156 [Jatropha curcas]
13 Hb_000209_010 0.1298026588 - - -
14 Hb_003727_060 0.1301007816 - - nucleic acid binding protein, putative [Ricinus communis]
15 Hb_002585_060 0.1314619404 - - PREDICTED: uncharacterized protein LOC104899128, partial [Beta vulgaris subsp. vulgaris]
16 Hb_004063_010 0.147497259 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_000916_010 0.1540811344 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
18 Hb_039547_010 0.1549720616 - - PREDICTED: equilibrative nucleotide transporter 3-like [Jatropha curcas]
19 Hb_000061_110 0.1640813779 - - -
20 Hb_005852_010 0.1708060863 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]

Gene co-expression network

sample Hb_003938_100 Hb_003938_100 Hb_000243_050 Hb_000243_050 Hb_003938_100--Hb_000243_050 Hb_138667_010 Hb_138667_010 Hb_003938_100--Hb_138667_010 Hb_038190_030 Hb_038190_030 Hb_003938_100--Hb_038190_030 Hb_001301_070 Hb_001301_070 Hb_003938_100--Hb_001301_070 Hb_000280_120 Hb_000280_120 Hb_003938_100--Hb_000280_120 Hb_002056_140 Hb_002056_140 Hb_003938_100--Hb_002056_140 Hb_000243_050--Hb_138667_010 Hb_000243_050--Hb_000280_120 Hb_168909_010 Hb_168909_010 Hb_000243_050--Hb_168909_010 Hb_000243_050--Hb_001301_070 Hb_028872_040 Hb_028872_040 Hb_000243_050--Hb_028872_040 Hb_138667_010--Hb_000280_120 Hb_138667_010--Hb_028872_040 Hb_007709_020 Hb_007709_020 Hb_138667_010--Hb_007709_020 Hb_138667_010--Hb_168909_010 Hb_005081_090 Hb_005081_090 Hb_038190_030--Hb_005081_090 Hb_038190_030--Hb_002056_140 Hb_038190_030--Hb_007709_020 Hb_003727_060 Hb_003727_060 Hb_038190_030--Hb_003727_060 Hb_038190_030--Hb_138667_010 Hb_000192_060 Hb_000192_060 Hb_001301_070--Hb_000192_060 Hb_151411_010 Hb_151411_010 Hb_001301_070--Hb_151411_010 Hb_000209_010 Hb_000209_010 Hb_001301_070--Hb_000209_010 Hb_000916_010 Hb_000916_010 Hb_001301_070--Hb_000916_010 Hb_039547_010 Hb_039547_010 Hb_001301_070--Hb_039547_010 Hb_000280_120--Hb_168909_010 Hb_000280_120--Hb_028872_040 Hb_006013_030 Hb_006013_030 Hb_000280_120--Hb_006013_030 Hb_004191_030 Hb_004191_030 Hb_002056_140--Hb_004191_030 Hb_005852_010 Hb_005852_010 Hb_002056_140--Hb_005852_010 Hb_002056_140--Hb_151411_010 Hb_002056_140--Hb_000192_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0773268 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0319752 0.0813461

CAGE analysis