Hb_003938_120

Information

Type -
Description -
Location Contig3938: 119859-123942
Sequence    

Annotation

kegg
ID pop:POPTR_0002s041001
description POPTRDRAFT_816092; autophagy 9 family protein
nr
ID XP_002302054.2
description autophagy 9 family protein, partial [Populus trichocarpa]
swissprot
ID A2QLJ9
description Autophagy-related protein 9 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=atg9 PE=3 SV=1
trembl
ID B9GS27
description Autophagy 9 family protein (Fragment) OS=Populus trichocarpa GN=POPTR_0002s041001g PE=4 SV=2
Gene Ontology
ID GO:0006635
description autophagy-related protein 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39429: 123713-123846
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003938_120 0.0 - - autophagy 9 family protein, partial [Populus trichocarpa]
2 Hb_000665_100 0.0722705305 - - PREDICTED: neurochondrin [Jatropha curcas]
3 Hb_007479_040 0.0825626431 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001304_110 0.0887340535 transcription factor TF Family: WRKY WRKY protein [Hevea brasiliensis]
5 Hb_000028_480 0.0934916887 - - PREDICTED: putative 3,4-dihydroxy-2-butanone kinase [Jatropha curcas]
6 Hb_005054_090 0.0941046077 - - PREDICTED: uncharacterized protein At2g39910 isoform X1 [Jatropha curcas]
7 Hb_004567_090 0.0950897341 - - PREDICTED: GPI transamidase component PIG-T [Jatropha curcas]
8 Hb_008959_010 0.0955199312 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000035_180 0.0961511886 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 4 [Jatropha curcas]
10 Hb_000003_590 0.0983846926 - - PREDICTED: uncharacterized protein LOC105631550 isoform X2 [Jatropha curcas]
11 Hb_000096_140 0.1006561457 transcription factor TF Family: GNAT PREDICTED: probable amino-acid acetyltransferase NAGS1, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_001442_040 0.1006881281 - - PREDICTED: peroxisome biogenesis factor 10 isoform X1 [Jatropha curcas]
13 Hb_004109_080 0.1007514364 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like isoform X1 [Populus euphratica]
14 Hb_002592_060 0.1011312435 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002518_260 0.1013805181 - - PREDICTED: zinc finger CCCH domain-containing protein 40-like [Jatropha curcas]
16 Hb_004254_090 0.1016754377 - - PREDICTED: cleavage stimulating factor 64 [Jatropha curcas]
17 Hb_002496_010 0.1018079544 - - PREDICTED: protein GDAP2 homolog isoform X1 [Jatropha curcas]
18 Hb_005686_090 0.102811983 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 2 isoform X1 [Jatropha curcas]
19 Hb_004846_220 0.1042009543 - - PREDICTED: probable protein phosphatase 2C 11 isoform X1 [Jatropha curcas]
20 Hb_000792_010 0.1044539997 - - PREDICTED: mRNA-capping enzyme [Jatropha curcas]

Gene co-expression network

sample Hb_003938_120 Hb_003938_120 Hb_000665_100 Hb_000665_100 Hb_003938_120--Hb_000665_100 Hb_007479_040 Hb_007479_040 Hb_003938_120--Hb_007479_040 Hb_001304_110 Hb_001304_110 Hb_003938_120--Hb_001304_110 Hb_000028_480 Hb_000028_480 Hb_003938_120--Hb_000028_480 Hb_005054_090 Hb_005054_090 Hb_003938_120--Hb_005054_090 Hb_004567_090 Hb_004567_090 Hb_003938_120--Hb_004567_090 Hb_003680_120 Hb_003680_120 Hb_000665_100--Hb_003680_120 Hb_000665_100--Hb_007479_040 Hb_002110_190 Hb_002110_190 Hb_000665_100--Hb_002110_190 Hb_000318_250 Hb_000318_250 Hb_000665_100--Hb_000318_250 Hb_000665_100--Hb_000028_480 Hb_007479_040--Hb_002110_190 Hb_007479_040--Hb_000028_480 Hb_002044_150 Hb_002044_150 Hb_007479_040--Hb_002044_150 Hb_007479_040--Hb_004567_090 Hb_002518_260 Hb_002518_260 Hb_007479_040--Hb_002518_260 Hb_004254_090 Hb_004254_090 Hb_007479_040--Hb_004254_090 Hb_005582_040 Hb_005582_040 Hb_001304_110--Hb_005582_040 Hb_010068_080 Hb_010068_080 Hb_001304_110--Hb_010068_080 Hb_005686_090 Hb_005686_090 Hb_001304_110--Hb_005686_090 Hb_001999_290 Hb_001999_290 Hb_001304_110--Hb_001999_290 Hb_011386_010 Hb_011386_010 Hb_001304_110--Hb_011386_010 Hb_005054_110 Hb_005054_110 Hb_001304_110--Hb_005054_110 Hb_000028_480--Hb_002518_260 Hb_000792_010 Hb_000792_010 Hb_000028_480--Hb_000792_010 Hb_001198_100 Hb_001198_100 Hb_000028_480--Hb_001198_100 Hb_000976_300 Hb_000976_300 Hb_000028_480--Hb_000976_300 Hb_028912_050 Hb_028912_050 Hb_000028_480--Hb_028912_050 Hb_005054_090--Hb_000792_010 Hb_007645_100 Hb_007645_100 Hb_005054_090--Hb_007645_100 Hb_003029_110 Hb_003029_110 Hb_005054_090--Hb_003029_110 Hb_000621_010 Hb_000621_010 Hb_005054_090--Hb_000621_010 Hb_000029_300 Hb_000029_300 Hb_005054_090--Hb_000029_300 Hb_000032_520 Hb_000032_520 Hb_005054_090--Hb_000032_520 Hb_004109_080 Hb_004109_080 Hb_004567_090--Hb_004109_080 Hb_004567_090--Hb_002110_190 Hb_012498_010 Hb_012498_010 Hb_004567_090--Hb_012498_010 Hb_003411_040 Hb_003411_040 Hb_004567_090--Hb_003411_040 Hb_054865_150 Hb_054865_150 Hb_004567_090--Hb_054865_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.816024 1.83685 2.07765 1.9392 2.44993 2.95252
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.46212 2.38194 3.04239 2.46767 3.05927

CAGE analysis