Hb_003938_180

Information

Type -
Description -
Location Contig3938: 167577-173291
Sequence    

Annotation

kegg
ID pop:POPTR_0005s24350g
description POPTRDRAFT_559672; lesion inducing family protein
nr
ID XP_002306835.1
description lesion inducing family protein [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9H8K2
description Lesion inducing family protein OS=Populus trichocarpa GN=POPTR_0005s24350g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39434: 167593-173229 , PASA_asmbl_39435: 167594-173240 , PASA_asmbl_39436: 168635-168867 , PASA_asmbl_39437: 169025-169191 , PASA_asmbl_39438: 170230-170515 , PASA_asmbl_39439: 173820-174236
cDNA
(Sanger)
(ID:Location)		 023_B02.ab1: 167593-173216 , 046_P23.ab1: 167868-173240

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003938_180 0.0 - - lesion inducing family protein [Populus trichocarpa]
2 Hb_001862_100 0.0698689164 - - PREDICTED: uncharacterized protein LOC105639799 isoform X2 [Jatropha curcas]
3 Hb_000069_100 0.0743486152 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002471_080 0.0799353989 - - oxidoreductase, putative [Ricinus communis]
5 Hb_005731_170 0.0805740318 - - hypothetical protein PRUPE_ppa011750mg [Prunus persica]
6 Hb_007382_150 0.080735519 - - PREDICTED: GDT1-like protein 4 [Jatropha curcas]
7 Hb_148200_010 0.0815515901 - - hypothetical protein 33 [Hevea brasiliensis]
8 Hb_001616_060 0.0827617784 - - PREDICTED: DNA-directed RNA polymerase subunit 10-like protein [Jatropha curcas]
9 Hb_001829_060 0.0828540856 - - Eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
10 Hb_002097_060 0.0853050279 - - PREDICTED: 50S ribosomal protein L9, chloroplastic-like isoform X1 [Jatropha curcas]
11 Hb_003455_040 0.0870015873 - - hypothetical protein JCGZ_17270 [Jatropha curcas]
12 Hb_000329_330 0.0870149401 - - PREDICTED: vesicle-associated protein 1-2-like [Jatropha curcas]
13 Hb_003929_120 0.0873018581 - - PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Jatropha curcas]
14 Hb_006573_220 0.0889408216 - - PREDICTED: trafficking protein particle complex subunit 1 [Jatropha curcas]
15 Hb_007943_090 0.0895378763 - - PREDICTED: probable plastidic glucose transporter 2 [Jatropha curcas]
16 Hb_000272_070 0.0915222351 - - snare protein YKt [Hevea brasiliensis]
17 Hb_003376_030 0.0917086286 - - PREDICTED: ribonuclease P protein subunit p29 isoform X2 [Jatropha curcas]
18 Hb_001575_020 0.0932438906 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000224_090 0.0940669535 - - Eukaryotic translation initiation factor 1A [Gossypium arboreum]
20 Hb_001109_020 0.0941705914 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003938_180 Hb_003938_180 Hb_001862_100 Hb_001862_100 Hb_003938_180--Hb_001862_100 Hb_000069_100 Hb_000069_100 Hb_003938_180--Hb_000069_100 Hb_002471_080 Hb_002471_080 Hb_003938_180--Hb_002471_080 Hb_005731_170 Hb_005731_170 Hb_003938_180--Hb_005731_170 Hb_007382_150 Hb_007382_150 Hb_003938_180--Hb_007382_150 Hb_148200_010 Hb_148200_010 Hb_003938_180--Hb_148200_010 Hb_001829_060 Hb_001829_060 Hb_001862_100--Hb_001829_060 Hb_001141_280 Hb_001141_280 Hb_001862_100--Hb_001141_280 Hb_001109_020 Hb_001109_020 Hb_001862_100--Hb_001109_020 Hb_000046_110 Hb_000046_110 Hb_001862_100--Hb_000046_110 Hb_002028_130 Hb_002028_130 Hb_001862_100--Hb_002028_130 Hb_002097_060 Hb_002097_060 Hb_000069_100--Hb_002097_060 Hb_006831_030 Hb_006831_030 Hb_000069_100--Hb_006831_030 Hb_000329_330 Hb_000329_330 Hb_000069_100--Hb_000329_330 Hb_001616_060 Hb_001616_060 Hb_000069_100--Hb_001616_060 Hb_000212_260 Hb_000212_260 Hb_000069_100--Hb_000212_260 Hb_006573_220 Hb_006573_220 Hb_000069_100--Hb_006573_220 Hb_000046_290 Hb_000046_290 Hb_002471_080--Hb_000046_290 Hb_001360_050 Hb_001360_050 Hb_002471_080--Hb_001360_050 Hb_002471_080--Hb_001829_060 Hb_124755_010 Hb_124755_010 Hb_002471_080--Hb_124755_010 Hb_000329_310 Hb_000329_310 Hb_002471_080--Hb_000329_310 Hb_000024_030 Hb_000024_030 Hb_002471_080--Hb_000024_030 Hb_003455_040 Hb_003455_040 Hb_005731_170--Hb_003455_040 Hb_001998_050 Hb_001998_050 Hb_005731_170--Hb_001998_050 Hb_002374_390 Hb_002374_390 Hb_005731_170--Hb_002374_390 Hb_005731_170--Hb_148200_010 Hb_003376_030 Hb_003376_030 Hb_005731_170--Hb_003376_030 Hb_005731_170--Hb_001829_060 Hb_007382_150--Hb_001616_060 Hb_007382_150--Hb_002097_060 Hb_007382_150--Hb_006573_220 Hb_007382_150--Hb_000069_100 Hb_007943_090 Hb_007943_090 Hb_007382_150--Hb_007943_090 Hb_007382_150--Hb_003376_030 Hb_001191_090 Hb_001191_090 Hb_148200_010--Hb_001191_090 Hb_148200_010--Hb_003376_030 Hb_003053_030 Hb_003053_030 Hb_148200_010--Hb_003053_030 Hb_001433_050 Hb_001433_050 Hb_148200_010--Hb_001433_050 Hb_004156_040 Hb_004156_040 Hb_148200_010--Hb_004156_040 Hb_001279_360 Hb_001279_360 Hb_148200_010--Hb_001279_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.2793 6.84764 9.30078 15.8762 26.4824 34.5567
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
65.0977 90.3018 77.7101 21.9346 10.6252

CAGE analysis