Hb_003939_050

Information

Type -
Description -
Location Contig3939: 41475-44007
Sequence    

Annotation

kegg
ID rcu:RCOM_1446160
description protein with unknown function (EC:2.7.1.71)
nr
ID XP_002512880.1
description protein with unknown function [Ricinus communis]
swissprot
ID Q9LW20
description Probable inactive shikimate kinase like 1, chloroplastic OS=Arabidopsis thaliana GN=SKL1 PE=2 SV=1
trembl
ID B9RH21
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1446160 PE=3 SV=1
Gene Ontology
ID GO:0009570
description probable inactive shikimate kinase like chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39451: 41455-41643 , PASA_asmbl_39452: 41743-44016
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003939_050 0.0 - - protein with unknown function [Ricinus communis]
2 Hb_030736_100 0.0671974915 - - conserved hypothetical protein [Ricinus communis]
3 Hb_029879_010 0.0681137313 - - ribosomal pseudouridine synthase, putative [Ricinus communis]
4 Hb_000883_020 0.0721080462 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
5 Hb_000819_080 0.0731021871 - - Plastid-lipid-associated protein, chloroplast precursor, putative [Ricinus communis]
6 Hb_001141_020 0.0752914539 - - PREDICTED: stress-induced-phosphoprotein 1 [Jatropha curcas]
7 Hb_007632_030 0.0761582914 - - PREDICTED: poly(A)-specific ribonuclease PARN isoform X1 [Jatropha curcas]
8 Hb_009545_080 0.0762171204 - - hypothetical protein POPTR_0008s15400g [Populus trichocarpa]
9 Hb_000329_320 0.0782649512 - - PREDICTED: DNA ligase 1 [Jatropha curcas]
10 Hb_000302_180 0.0787669478 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_000804_040 0.0842805045 - - protein with unknown function [Ricinus communis]
12 Hb_002893_070 0.0845836986 - - PREDICTED: zeaxanthin epoxidase, chloroplastic [Jatropha curcas]
13 Hb_022693_140 0.0854516214 - - PREDICTED: uncharacterized protein LOC105632654 isoform X1 [Jatropha curcas]
14 Hb_003794_010 0.0868811615 - - PREDICTED: uncharacterized protein LOC105641013 [Jatropha curcas]
15 Hb_000224_160 0.087456101 - - PREDICTED: phenylalanine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
16 Hb_188063_020 0.0877597453 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002490_020 0.0886802031 - - peptidyl-tRNA hydrolase family protein [Populus trichocarpa]
18 Hb_000062_370 0.0899830178 - - beta-ketoacyl-ACP reductase [Vernicia fordii]
19 Hb_000365_120 0.0900860179 - - PREDICTED: bifunctional protein FolD 1, mitochondrial [Jatropha curcas]
20 Hb_005116_160 0.0904331277 transcription factor TF Family: TRAF -

Gene co-expression network

sample Hb_003939_050 Hb_003939_050 Hb_030736_100 Hb_030736_100 Hb_003939_050--Hb_030736_100 Hb_029879_010 Hb_029879_010 Hb_003939_050--Hb_029879_010 Hb_000883_020 Hb_000883_020 Hb_003939_050--Hb_000883_020 Hb_000819_080 Hb_000819_080 Hb_003939_050--Hb_000819_080 Hb_001141_020 Hb_001141_020 Hb_003939_050--Hb_001141_020 Hb_007632_030 Hb_007632_030 Hb_003939_050--Hb_007632_030 Hb_003025_110 Hb_003025_110 Hb_030736_100--Hb_003025_110 Hb_030736_100--Hb_000883_020 Hb_000575_040 Hb_000575_040 Hb_030736_100--Hb_000575_040 Hb_002271_030 Hb_002271_030 Hb_030736_100--Hb_002271_030 Hb_000879_200 Hb_000879_200 Hb_030736_100--Hb_000879_200 Hb_029879_010--Hb_030736_100 Hb_029879_010--Hb_000883_020 Hb_002592_060 Hb_002592_060 Hb_029879_010--Hb_002592_060 Hb_022693_140 Hb_022693_140 Hb_029879_010--Hb_022693_140 Hb_063716_100 Hb_063716_100 Hb_029879_010--Hb_063716_100 Hb_009545_080 Hb_009545_080 Hb_000883_020--Hb_009545_080 Hb_002997_080 Hb_002997_080 Hb_000883_020--Hb_002997_080 Hb_011995_010 Hb_011995_010 Hb_000883_020--Hb_011995_010 Hb_000230_560 Hb_000230_560 Hb_000883_020--Hb_000230_560 Hb_032986_010 Hb_032986_010 Hb_000883_020--Hb_032986_010 Hb_001357_350 Hb_001357_350 Hb_000883_020--Hb_001357_350 Hb_000302_180 Hb_000302_180 Hb_000819_080--Hb_000302_180 Hb_001019_190 Hb_001019_190 Hb_000819_080--Hb_001019_190 Hb_002681_070 Hb_002681_070 Hb_000819_080--Hb_002681_070 Hb_000819_080--Hb_030736_100 Hb_004155_010 Hb_004155_010 Hb_000819_080--Hb_004155_010 Hb_009467_060 Hb_009467_060 Hb_001141_020--Hb_009467_060 Hb_188063_020 Hb_188063_020 Hb_001141_020--Hb_188063_020 Hb_001141_020--Hb_003025_110 Hb_001141_020--Hb_000883_020 Hb_009548_020 Hb_009548_020 Hb_001141_020--Hb_009548_020 Hb_001141_020--Hb_030736_100 Hb_000365_120 Hb_000365_120 Hb_007632_030--Hb_000365_120 Hb_009421_020 Hb_009421_020 Hb_007632_030--Hb_009421_020 Hb_156973_010 Hb_156973_010 Hb_007632_030--Hb_156973_010 Hb_004841_010 Hb_004841_010 Hb_007632_030--Hb_004841_010 Hb_000120_790 Hb_000120_790 Hb_007632_030--Hb_000120_790 Hb_023386_020 Hb_023386_020 Hb_007632_030--Hb_023386_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.6689 10.3092 18.6673 8.94087 21.29 22.4163
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.1026 18.4615 19.3951 15.8204 23.7841

CAGE analysis