Hb_003939_060

Information

Type -
Description -
Location Contig3939: 45794-57032
Sequence    

Annotation

kegg
ID rcu:RCOM_1446180
description hypothetical protein
nr
ID XP_002512882.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID O22799
description Uncharacterized protein At2g33490 OS=Arabidopsis thaliana GN=At2g33490 PE=4 SV=2
trembl
ID B9RH23
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1446180 PE=4 SV=1
Gene Ontology
ID GO:0005737
description hydroxyproline-rich glycoprotein family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39453: 45609-46640 , PASA_asmbl_39454: 46108-46267 , PASA_asmbl_39455: 46684-55970 , PASA_asmbl_39456: 56972-57237
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003939_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003929_210 0.038948554 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
3 Hb_009302_030 0.0554559779 - - hypothetical protein RCOM_1176340 [Ricinus communis]
4 Hb_000110_350 0.0561138516 - - PREDICTED: ubiquitin receptor RAD23c-like isoform X2 [Gossypium raimondii]
5 Hb_000996_020 0.0589280521 - - PREDICTED: RNA-binding protein NOB1 [Jatropha curcas]
6 Hb_001904_030 0.0620786213 - - PREDICTED: importin-5 [Jatropha curcas]
7 Hb_002007_110 0.0634829104 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25 isoform X2 [Jatropha curcas]
8 Hb_000373_170 0.0649843845 - - PREDICTED: exocyst complex component SEC5A-like [Jatropha curcas]
9 Hb_000645_130 0.0652698298 - - PREDICTED: bromodomain and WD repeat-containing protein 3 [Jatropha curcas]
10 Hb_003918_030 0.065548564 - - PREDICTED: oxysterol-binding protein-related protein 1C-like isoform X1 [Jatropha curcas]
11 Hb_170077_010 0.0659171192 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X1 [Jatropha curcas]
12 Hb_000008_240 0.0663654522 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001951_170 0.066859343 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
14 Hb_000958_050 0.0671696903 - - hypothetical protein JCGZ_16781 [Jatropha curcas]
15 Hb_000358_220 0.0672093145 - - PREDICTED: SNW/SKI-interacting protein-like [Jatropha curcas]
16 Hb_000445_060 0.0676064742 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
17 Hb_000579_010 0.0691825146 transcription factor TF Family: SET PREDICTED: probable histone-lysine N-methyltransferase ATXR3 [Jatropha curcas]
18 Hb_002928_190 0.0695867773 transcription factor TF Family: RWP-RK PREDICTED: protein NLP4 [Jatropha curcas]
19 Hb_005832_010 0.070363939 - - PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas]
20 Hb_000179_190 0.0714068422 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 4 isoform X1 [Vitis vinifera]

Gene co-expression network

sample Hb_003939_060 Hb_003939_060 Hb_003929_210 Hb_003929_210 Hb_003939_060--Hb_003929_210 Hb_009302_030 Hb_009302_030 Hb_003939_060--Hb_009302_030 Hb_000110_350 Hb_000110_350 Hb_003939_060--Hb_000110_350 Hb_000996_020 Hb_000996_020 Hb_003939_060--Hb_000996_020 Hb_001904_030 Hb_001904_030 Hb_003939_060--Hb_001904_030 Hb_002007_110 Hb_002007_110 Hb_003939_060--Hb_002007_110 Hb_003929_210--Hb_000110_350 Hb_033312_130 Hb_033312_130 Hb_003929_210--Hb_033312_130 Hb_003929_210--Hb_000996_020 Hb_000358_220 Hb_000358_220 Hb_003929_210--Hb_000358_220 Hb_002768_050 Hb_002768_050 Hb_003929_210--Hb_002768_050 Hb_000645_130 Hb_000645_130 Hb_009302_030--Hb_000645_130 Hb_011249_060 Hb_011249_060 Hb_009302_030--Hb_011249_060 Hb_000703_200 Hb_000703_200 Hb_009302_030--Hb_000703_200 Hb_001534_210 Hb_001534_210 Hb_009302_030--Hb_001534_210 Hb_005834_040 Hb_005834_040 Hb_009302_030--Hb_005834_040 Hb_170077_010 Hb_170077_010 Hb_000110_350--Hb_170077_010 Hb_000179_190 Hb_000179_190 Hb_000110_350--Hb_000179_190 Hb_000110_350--Hb_002768_050 Hb_000445_060 Hb_000445_060 Hb_000110_350--Hb_000445_060 Hb_000110_350--Hb_000996_020 Hb_000996_020--Hb_000445_060 Hb_000373_170 Hb_000373_170 Hb_000996_020--Hb_000373_170 Hb_002461_020 Hb_002461_020 Hb_000996_020--Hb_002461_020 Hb_000529_060 Hb_000529_060 Hb_000996_020--Hb_000529_060 Hb_000661_120 Hb_000661_120 Hb_000996_020--Hb_000661_120 Hb_005333_140 Hb_005333_140 Hb_000996_020--Hb_005333_140 Hb_005832_010 Hb_005832_010 Hb_001904_030--Hb_005832_010 Hb_000172_340 Hb_000172_340 Hb_001904_030--Hb_000172_340 Hb_000479_240 Hb_000479_240 Hb_001904_030--Hb_000479_240 Hb_003604_050 Hb_003604_050 Hb_001904_030--Hb_003604_050 Hb_002027_280 Hb_002027_280 Hb_001904_030--Hb_002027_280 Hb_001221_090 Hb_001221_090 Hb_001904_030--Hb_001221_090 Hb_012055_110 Hb_012055_110 Hb_002007_110--Hb_012055_110 Hb_123531_010 Hb_123531_010 Hb_002007_110--Hb_123531_010 Hb_002007_110--Hb_005832_010 Hb_000331_580 Hb_000331_580 Hb_002007_110--Hb_000331_580 Hb_000066_150 Hb_000066_150 Hb_002007_110--Hb_000066_150 Hb_006031_010 Hb_006031_010 Hb_002007_110--Hb_006031_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.78725 13.2308 7.78086 6.7764 4.82979 6.42432
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.96638 3.50921 3.85498 6.81502 9.37864

CAGE analysis