Hb_003939_080

Information

Type -
Description -
Location Contig3939: 61435-66043
Sequence    

Annotation

kegg
ID rcu:RCOM_1446310
description hypothetical protein
nr
ID XP_002512885.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RH26
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1446310 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39457: 61490-66023
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003939_080 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002868_010 0.0340224719 - - 60S ribosomal protein L30, putative [Ricinus communis]
3 Hb_001512_070 0.0637732558 - - PREDICTED: ras-related protein RABB1b [Malus domestica]
4 Hb_001946_210 0.0661930124 - - ribosomal protein l7ae, putative [Ricinus communis]
5 Hb_011360_140 0.078400028 - - 40S ribosomal protein S19, putative [Ricinus communis]
6 Hb_002007_060 0.0786058411 - - hypothetical protein JCGZ_23323 [Jatropha curcas]
7 Hb_001828_090 0.0803074504 - - prohibitin, putative [Ricinus communis]
8 Hb_000101_270 0.0813605447 - - pleckstrin homology domain-containing family protein [Populus trichocarpa]
9 Hb_000473_040 0.0818471295 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KIWI-like [Jatropha curcas]
10 Hb_000000_160 0.0828168065 - - PREDICTED: membrin-11 [Jatropha curcas]
11 Hb_003687_110 0.082938437 - - PREDICTED: uncharacterized protein At4g14342 isoform X1 [Malus domestica]
12 Hb_002518_050 0.0833051492 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM10 [Jatropha curcas]
13 Hb_011381_060 0.0861738447 - - PREDICTED: ADP-ribosylation factor 3 [Jatropha curcas]
14 Hb_001314_100 0.087016069 - - hypothetical protein POPTR_0001s01820g [Populus trichocarpa]
15 Hb_007101_150 0.0887738885 - - hypothetical protein CICLE_v10033984mg [Citrus clementina]
16 Hb_000684_090 0.0893724642 transcription factor TF Family: S1Fa-like -
17 Hb_001369_660 0.0897643322 - - hypothetical protein B456_001G174200, partial [Gossypium raimondii]
18 Hb_009767_120 0.0902897767 - - PREDICTED: probable prefoldin subunit 2 [Jatropha curcas]
19 Hb_001235_190 0.0904572973 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
20 Hb_000970_010 0.0905753499 - - PREDICTED: 60S ribosomal protein L26-1 [Jatropha curcas]

Gene co-expression network

sample Hb_003939_080 Hb_003939_080 Hb_002868_010 Hb_002868_010 Hb_003939_080--Hb_002868_010 Hb_001512_070 Hb_001512_070 Hb_003939_080--Hb_001512_070 Hb_001946_210 Hb_001946_210 Hb_003939_080--Hb_001946_210 Hb_011360_140 Hb_011360_140 Hb_003939_080--Hb_011360_140 Hb_002007_060 Hb_002007_060 Hb_003939_080--Hb_002007_060 Hb_001828_090 Hb_001828_090 Hb_003939_080--Hb_001828_090 Hb_002868_010--Hb_001946_210 Hb_002868_010--Hb_002007_060 Hb_000000_160 Hb_000000_160 Hb_002868_010--Hb_000000_160 Hb_002868_010--Hb_011360_140 Hb_002868_010--Hb_001512_070 Hb_007101_150 Hb_007101_150 Hb_001512_070--Hb_007101_150 Hb_001512_070--Hb_001828_090 Hb_012762_050 Hb_012762_050 Hb_001512_070--Hb_012762_050 Hb_000684_090 Hb_000684_090 Hb_001512_070--Hb_000684_090 Hb_000101_270 Hb_000101_270 Hb_001946_210--Hb_000101_270 Hb_046049_010 Hb_046049_010 Hb_001946_210--Hb_046049_010 Hb_000380_190 Hb_000380_190 Hb_001946_210--Hb_000380_190 Hb_002311_350 Hb_002311_350 Hb_001946_210--Hb_002311_350 Hb_000473_040 Hb_000473_040 Hb_011360_140--Hb_000473_040 Hb_011571_020 Hb_011571_020 Hb_011360_140--Hb_011571_020 Hb_000933_180 Hb_000933_180 Hb_011360_140--Hb_000933_180 Hb_000392_440 Hb_000392_440 Hb_011360_140--Hb_000392_440 Hb_011360_140--Hb_001828_090 Hb_005993_040 Hb_005993_040 Hb_011360_140--Hb_005993_040 Hb_023226_040 Hb_023226_040 Hb_002007_060--Hb_023226_040 Hb_000866_270 Hb_000866_270 Hb_002007_060--Hb_000866_270 Hb_001259_090 Hb_001259_090 Hb_002007_060--Hb_001259_090 Hb_001301_160 Hb_001301_160 Hb_002007_060--Hb_001301_160 Hb_002007_060--Hb_000000_160 Hb_005539_350 Hb_005539_350 Hb_002007_060--Hb_005539_350 Hb_001828_090--Hb_007101_150 Hb_000221_220 Hb_000221_220 Hb_001828_090--Hb_000221_220 Hb_001379_060 Hb_001379_060 Hb_001828_090--Hb_001379_060 Hb_001828_090--Hb_000684_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
112.11 57.9198 56.6214 45.0231 94.4268 115.862
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
124.243 214.625 76.4132 34.9323 16.6081

CAGE analysis