Hb_003940_050

Information

Type -
Description -
Location Contig3940: 50688-52645
Sequence    

Annotation

kegg
ID gmx:102669165
description uncharacterized LOC102669165
nr
ID XP_011075658.1
description PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
swissprot
ID -
description -
trembl
ID B8BLB5
description Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_36669 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003940_050 0.0 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
2 Hb_001390_020 0.2674618922 - - malate dehydrogenase, putative [Ricinus communis]
3 Hb_022958_010 0.2790982788 - - PREDICTED: probable disease resistance protein At4g27220 [Populus euphratica]
4 Hb_090530_010 0.2824573104 desease resistance Gene Name: NB-ARC phosphoprotein phosphatase, putative [Ricinus communis]
5 Hb_078477_060 0.2841738663 - - PREDICTED: histone-lysine N-methyltransferase ATX4 [Jatropha curcas]
6 Hb_002475_150 0.2863593045 - - PREDICTED: importin subunit beta-3-like [Jatropha curcas]
7 Hb_004994_370 0.2899041138 - - -
8 Hb_006637_080 0.2903761158 - - PREDICTED: 29 kDa ribonucleoprotein A, chloroplastic [Jatropha curcas]
9 Hb_002740_190 0.2908785217 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Jatropha curcas]
10 Hb_015026_080 0.2916069768 - - -
11 Hb_154141_010 0.2926414718 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
12 Hb_001832_040 0.29269679 - - conserved hypothetical protein [Ricinus communis]
13 Hb_014361_110 0.2929384574 - - RNA binding protein, putative [Ricinus communis]
14 Hb_000803_240 0.2938242027 - - hypothetical protein CICLE_v100143612mg, partial [Citrus clementina]
15 Hb_080952_050 0.2956290026 - - PREDICTED: twinkle homolog protein, chloroplastic/mitochondrial [Nelumbo nucifera]
16 Hb_032876_030 0.2962610675 - - -
17 Hb_002518_120 0.2965571371 - - hypothetical protein RCOM_0731250 [Ricinus communis]
18 Hb_000754_050 0.297640399 - - PREDICTED: thylakoid lumenal 19 kDa protein, chloroplastic [Jatropha curcas]
19 Hb_000395_090 0.2977276787 - - PREDICTED: uncharacterized protein LOC105645572 [Jatropha curcas]
20 Hb_004466_050 0.2980127686 - - PREDICTED: uncharacterized protein LOC105649250, partial [Jatropha curcas]

Gene co-expression network

sample Hb_003940_050 Hb_003940_050 Hb_001390_020 Hb_001390_020 Hb_003940_050--Hb_001390_020 Hb_022958_010 Hb_022958_010 Hb_003940_050--Hb_022958_010 Hb_090530_010 Hb_090530_010 Hb_003940_050--Hb_090530_010 Hb_078477_060 Hb_078477_060 Hb_003940_050--Hb_078477_060 Hb_002475_150 Hb_002475_150 Hb_003940_050--Hb_002475_150 Hb_004994_370 Hb_004994_370 Hb_003940_050--Hb_004994_370 Hb_031139_010 Hb_031139_010 Hb_001390_020--Hb_031139_010 Hb_000754_050 Hb_000754_050 Hb_001390_020--Hb_000754_050 Hb_014361_110 Hb_014361_110 Hb_001390_020--Hb_014361_110 Hb_002232_380 Hb_002232_380 Hb_001390_020--Hb_002232_380 Hb_003494_030 Hb_003494_030 Hb_001390_020--Hb_003494_030 Hb_003106_170 Hb_003106_170 Hb_001390_020--Hb_003106_170 Hb_154141_010 Hb_154141_010 Hb_022958_010--Hb_154141_010 Hb_022958_010--Hb_090530_010 Hb_006274_050 Hb_006274_050 Hb_022958_010--Hb_006274_050 Hb_006905_030 Hb_006905_030 Hb_022958_010--Hb_006905_030 Hb_001341_020 Hb_001341_020 Hb_022958_010--Hb_001341_020 Hb_032876_030 Hb_032876_030 Hb_022958_010--Hb_032876_030 Hb_008092_080 Hb_008092_080 Hb_090530_010--Hb_008092_080 Hb_002740_190 Hb_002740_190 Hb_090530_010--Hb_002740_190 Hb_024714_080 Hb_024714_080 Hb_090530_010--Hb_024714_080 Hb_028707_110 Hb_028707_110 Hb_090530_010--Hb_028707_110 Hb_008123_010 Hb_008123_010 Hb_090530_010--Hb_008123_010 Hb_003077_130 Hb_003077_130 Hb_090530_010--Hb_003077_130 Hb_000014_190 Hb_000014_190 Hb_078477_060--Hb_000014_190 Hb_000963_090 Hb_000963_090 Hb_078477_060--Hb_000963_090 Hb_078477_060--Hb_003077_130 Hb_001080_030 Hb_001080_030 Hb_078477_060--Hb_001080_030 Hb_001080_150 Hb_001080_150 Hb_078477_060--Hb_001080_150 Hb_001793_030 Hb_001793_030 Hb_078477_060--Hb_001793_030 Hb_001811_080 Hb_001811_080 Hb_002475_150--Hb_001811_080 Hb_001373_130 Hb_001373_130 Hb_002475_150--Hb_001373_130 Hb_003906_060 Hb_003906_060 Hb_002475_150--Hb_003906_060 Hb_009615_180 Hb_009615_180 Hb_002475_150--Hb_009615_180 Hb_005743_030 Hb_005743_030 Hb_002475_150--Hb_005743_030 Hb_000856_130 Hb_000856_130 Hb_002475_150--Hb_000856_130 Hb_004550_070 Hb_004550_070 Hb_004994_370--Hb_004550_070 Hb_003915_040 Hb_003915_040 Hb_004994_370--Hb_003915_040 Hb_000018_050 Hb_000018_050 Hb_004994_370--Hb_000018_050 Hb_001488_260 Hb_001488_260 Hb_004994_370--Hb_001488_260 Hb_004994_370--Hb_000754_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0343762 0.00946937 0.0448783 0.00826445 0.0114774 0.0436439
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0410188 0 0.057193 0.172665

CAGE analysis