Hb_003943_040

Information

Type -
Description -
Location Contig3943: 42243-43232
Sequence    

Annotation

kegg
ID rcu:RCOM_0519560
description DNA binding protein, putative
nr
ID XP_002528771.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q6NWJ4
description DnaJ homolog subfamily C member 2 OS=Danio rerio GN=dnajc2 PE=2 SV=1
trembl
ID B9SS02
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_0519560 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dnaj homolog subfamily c member 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39479: 41597-41751 , PASA_asmbl_39480: 42201-43455
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003943_040 0.0 - - DNA binding protein, putative [Ricinus communis]
2 Hb_002687_110 0.0731886984 - - PREDICTED: uncharacterized WD repeat-containing protein C343.04c isoform X1 [Jatropha curcas]
3 Hb_004738_040 0.0856136621 - - PREDICTED: serine/threonine-protein kinase EDR1-like isoform X2 [Populus euphratica]
4 Hb_001277_330 0.0889047915 - - PREDICTED: transmembrane emp24 domain-containing protein p24beta3 [Jatropha curcas]
5 Hb_000409_020 0.0891992259 - - PREDICTED: V-type proton ATPase subunit d2 [Jatropha curcas]
6 Hb_011316_040 0.0897434557 - - peptidase, putative [Ricinus communis]
7 Hb_004724_420 0.0901004333 - - fucose synthetase, putative [Ricinus communis]
8 Hb_000648_110 0.0923842978 - - PREDICTED: D-xylose-proton symporter-like 3, chloroplastic [Jatropha curcas]
9 Hb_002006_090 0.0949558678 - - PREDICTED: pentatricopeptide repeat-containing protein At5g50990 [Jatropha curcas]
10 Hb_000614_230 0.0965060243 - - PREDICTED: F-box protein SKIP14 [Jatropha curcas]
11 Hb_000363_160 0.0995239123 - - Heterogeneous nuclear ribonucleoprotein 27C, putative [Ricinus communis]
12 Hb_004109_190 0.099924466 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 25-like isoform X2 [Populus euphratica]
13 Hb_032215_050 0.1012937036 - - Xyloglucan galactosyltransferase KATAMARI1, putative [Ricinus communis]
14 Hb_000898_040 0.1021281505 - - ankyrin repeat-containing protein, putative [Ricinus communis]
15 Hb_002005_020 0.1023062793 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005625_020 0.1030559416 transcription factor TF Family: bZIP PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X1 [Jatropha curcas]
17 Hb_000080_190 0.1042916464 - - -
18 Hb_000431_010 0.1057009811 - - hypothetical protein POPTR_0016s05340g [Populus trichocarpa]
19 Hb_000510_320 0.1060432253 - - PREDICTED: uncharacterized protein LOC105649907 [Jatropha curcas]
20 Hb_008695_210 0.1076209675 - - PREDICTED: serine hydroxymethyltransferase 7 [Jatropha curcas]

Gene co-expression network

sample Hb_003943_040 Hb_003943_040 Hb_002687_110 Hb_002687_110 Hb_003943_040--Hb_002687_110 Hb_004738_040 Hb_004738_040 Hb_003943_040--Hb_004738_040 Hb_001277_330 Hb_001277_330 Hb_003943_040--Hb_001277_330 Hb_000409_020 Hb_000409_020 Hb_003943_040--Hb_000409_020 Hb_011316_040 Hb_011316_040 Hb_003943_040--Hb_011316_040 Hb_004724_420 Hb_004724_420 Hb_003943_040--Hb_004724_420 Hb_000431_010 Hb_000431_010 Hb_002687_110--Hb_000431_010 Hb_002687_110--Hb_004738_040 Hb_000080_190 Hb_000080_190 Hb_002687_110--Hb_000080_190 Hb_002687_110--Hb_001277_330 Hb_002687_110--Hb_000409_020 Hb_000510_320 Hb_000510_320 Hb_004738_040--Hb_000510_320 Hb_004738_040--Hb_001277_330 Hb_005625_020 Hb_005625_020 Hb_004738_040--Hb_005625_020 Hb_004738_040--Hb_000409_020 Hb_004738_040--Hb_000431_010 Hb_001277_330--Hb_011316_040 Hb_002518_140 Hb_002518_140 Hb_001277_330--Hb_002518_140 Hb_000754_040 Hb_000754_040 Hb_001277_330--Hb_000754_040 Hb_006915_050 Hb_006915_050 Hb_001277_330--Hb_006915_050 Hb_004994_100 Hb_004994_100 Hb_001277_330--Hb_004994_100 Hb_003206_070 Hb_003206_070 Hb_000409_020--Hb_003206_070 Hb_000898_040 Hb_000898_040 Hb_000409_020--Hb_000898_040 Hb_004109_090 Hb_004109_090 Hb_000409_020--Hb_004109_090 Hb_005663_060 Hb_005663_060 Hb_000409_020--Hb_005663_060 Hb_002016_110 Hb_002016_110 Hb_000409_020--Hb_002016_110 Hb_000236_070 Hb_000236_070 Hb_011316_040--Hb_000236_070 Hb_006541_030 Hb_006541_030 Hb_011316_040--Hb_006541_030 Hb_000648_110 Hb_000648_110 Hb_011316_040--Hb_000648_110 Hb_000206_210 Hb_000206_210 Hb_011316_040--Hb_000206_210 Hb_000928_210 Hb_000928_210 Hb_011316_040--Hb_000928_210 Hb_183086_060 Hb_183086_060 Hb_004724_420--Hb_183086_060 Hb_004109_190 Hb_004109_190 Hb_004724_420--Hb_004109_190 Hb_000041_050 Hb_000041_050 Hb_004724_420--Hb_000041_050 Hb_000700_110 Hb_000700_110 Hb_004724_420--Hb_000700_110 Hb_000614_230 Hb_000614_230 Hb_004724_420--Hb_000614_230 Hb_005289_030 Hb_005289_030 Hb_004724_420--Hb_005289_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
58.2601 17.7557 10.3637 47.6271 50.895 50.8022
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
72.7137 57.6728 106.975 27.176 34.0743

CAGE analysis