Hb_003943_130

Information

Type -
Description -
Location Contig3943: 94084-94371
Sequence    

Annotation

kegg
ID rcu:RCOM_0519520
description hypothetical protein
nr
ID XP_012074995.1
description PREDICTED: uncharacterized protein LOC105636341 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LBS2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11834 PE=4 SV=1
Gene Ontology
ID GO:0009941
description PREDICTED: uncharacterized protein LOC105636341

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39484: 94027-94851
cDNA
(Sanger)
(ID:Location)		 011_C11.ab1: 94034-94421 , 012_P10.ab1: 94034-94421 , 053_N11.ab1: 94027-94427

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003943_130 0.0 - - PREDICTED: uncharacterized protein LOC105636341 [Jatropha curcas]
2 Hb_001369_640 0.0710885896 - - PREDICTED: 40S ribosomal protein S20-1 [Jatropha curcas]
3 Hb_002289_120 0.0880668606 - - PREDICTED: uncharacterized protein LOC105645218 isoform X2 [Jatropha curcas]
4 Hb_000152_420 0.0954688129 - - hypothetical protein B456_001G174200, partial [Gossypium raimondii]
5 Hb_002316_060 0.0981603677 - - PREDICTED: uncharacterized protein LOC105640410 [Jatropha curcas]
6 Hb_001538_090 0.099760265 - - 40S ribosomal protein S29 [Morus notabilis]
7 Hb_006909_030 0.1042435279 - - 40S ribosomal protein S17B [Hevea brasiliensis]
8 Hb_000196_050 0.1061737797 - - hypothetical protein JCGZ_20265 [Jatropha curcas]
9 Hb_001638_260 0.1089986459 - - PREDICTED: 60S acidic ribosomal protein P1 [Vitis vinifera]
10 Hb_001314_100 0.1096324632 - - hypothetical protein POPTR_0001s01820g [Populus trichocarpa]
11 Hb_001946_210 0.110718808 - - ribosomal protein l7ae, putative [Ricinus communis]
12 Hb_000690_180 0.1109633967 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 13 homolog B [Jatropha curcas]
13 Hb_134949_020 0.1116890063 - - PREDICTED: thioredoxin-like protein YLS8 [Cucumis sativus]
14 Hb_000561_020 0.1128245501 - - hypothetical protein JCGZ_19196 [Jatropha curcas]
15 Hb_001369_660 0.1131457345 - - hypothetical protein B456_001G174200, partial [Gossypium raimondii]
16 Hb_000268_010 0.1135678286 - - conserved hypothetical protein [Ricinus communis]
17 Hb_012368_020 0.1138175519 - - PREDICTED: uncharacterized protein LOC105650964 [Jatropha curcas]
18 Hb_009051_030 0.1138914357 - - PREDICTED: thioredoxin O1, mitochondrial-like [Jatropha curcas]
19 Hb_003641_020 0.1142419456 - - hypothetical protein POPTR_0006s13960g [Populus trichocarpa]
20 Hb_009793_010 0.1171859157 - - hypothetical protein JCGZ_17222 [Jatropha curcas]

Gene co-expression network

sample Hb_003943_130 Hb_003943_130 Hb_001369_640 Hb_001369_640 Hb_003943_130--Hb_001369_640 Hb_002289_120 Hb_002289_120 Hb_003943_130--Hb_002289_120 Hb_000152_420 Hb_000152_420 Hb_003943_130--Hb_000152_420 Hb_002316_060 Hb_002316_060 Hb_003943_130--Hb_002316_060 Hb_001538_090 Hb_001538_090 Hb_003943_130--Hb_001538_090 Hb_006909_030 Hb_006909_030 Hb_003943_130--Hb_006909_030 Hb_001369_640--Hb_000152_420 Hb_000690_180 Hb_000690_180 Hb_001369_640--Hb_000690_180 Hb_001314_100 Hb_001314_100 Hb_001369_640--Hb_001314_100 Hb_001369_640--Hb_002289_120 Hb_134949_020 Hb_134949_020 Hb_001369_640--Hb_134949_020 Hb_001814_070 Hb_001814_070 Hb_002289_120--Hb_001814_070 Hb_002289_120--Hb_000152_420 Hb_128048_010 Hb_128048_010 Hb_002289_120--Hb_128048_010 Hb_019249_010 Hb_019249_010 Hb_002289_120--Hb_019249_010 Hb_003878_010 Hb_003878_010 Hb_002289_120--Hb_003878_010 Hb_000792_130 Hb_000792_130 Hb_000152_420--Hb_000792_130 Hb_009793_010 Hb_009793_010 Hb_000152_420--Hb_009793_010 Hb_004157_030 Hb_004157_030 Hb_000152_420--Hb_004157_030 Hb_000172_320 Hb_000172_320 Hb_000152_420--Hb_000172_320 Hb_000438_220 Hb_000438_220 Hb_002316_060--Hb_000438_220 Hb_000196_050 Hb_000196_050 Hb_002316_060--Hb_000196_050 Hb_002316_060--Hb_001369_640 Hb_002316_060--Hb_001314_100 Hb_001946_210 Hb_001946_210 Hb_002316_060--Hb_001946_210 Hb_001538_090--Hb_001369_640 Hb_001341_090 Hb_001341_090 Hb_001538_090--Hb_001341_090 Hb_001538_090--Hb_134949_020 Hb_003536_110 Hb_003536_110 Hb_001538_090--Hb_003536_110 Hb_002375_070 Hb_002375_070 Hb_001538_090--Hb_002375_070 Hb_007113_070 Hb_007113_070 Hb_001538_090--Hb_007113_070 Hb_004306_020 Hb_004306_020 Hb_006909_030--Hb_004306_020 Hb_005686_060 Hb_005686_060 Hb_006909_030--Hb_005686_060 Hb_004705_100 Hb_004705_100 Hb_006909_030--Hb_004705_100 Hb_004545_060 Hb_004545_060 Hb_006909_030--Hb_004545_060 Hb_000045_090 Hb_000045_090 Hb_006909_030--Hb_000045_090 Hb_010180_020 Hb_010180_020 Hb_006909_030--Hb_010180_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
104.974 86.2177 52.7501 127.257 73.716 160.915
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
169.273 298.774 92.5927 41.8502 25.6905

CAGE analysis