Hb_003944_010

Information

Type -
Description -
Location Contig3944: 5285-9417
Sequence    

Annotation

kegg
ID pop:POPTR_0019s10720g
description POPTRDRAFT_574226; hypothetical protein
nr
ID XP_012079733.1
description PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
swissprot
ID Q9SGP2
description Receptor-like protein kinase HSL1 OS=Arabidopsis thaliana GN=HSL1 PE=2 SV=1
trembl
ID A0A067K670
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14857 PE=3 SV=1
Gene Ontology
ID GO:0016021
description receptor-like protein kinase haiku2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39488: 6748-6908 , PASA_asmbl_39489: 7721-7964 , PASA_asmbl_39491: 8458-9783 , PASA_asmbl_39492: 9845-10014
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003944_010 0.0 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
2 Hb_156850_020 0.1186491402 - - ATP-dependent zinc metalloprotease FTSH 1, chloroplastic [Glycine soja]
3 Hb_007595_020 0.1202605987 - - maturase K [Hevea brasiliensis]
4 Hb_010080_070 0.1286973257 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH, chloroplastic [Jatropha curcas]
5 Hb_005779_090 0.1348182369 transcription factor TF Family: ERF hypothetical protein POPTR_0014s05500g [Populus trichocarpa]
6 Hb_007201_010 0.1348887109 - - PREDICTED: uncharacterized protein LOC105631226 isoform X2 [Jatropha curcas]
7 Hb_185274_010 0.1353139854 - - hypothetical protein ARALYDRAFT_330174 [Arabidopsis lyrata subsp. lyrata]
8 Hb_106552_030 0.1367631517 - - hypothetical protein POPTR_0006s23180g [Populus trichocarpa]
9 Hb_001775_100 0.1373180257 - - PREDICTED: probable 2-carboxy-D-arabinitol-1-phosphatase [Jatropha curcas]
10 Hb_068804_110 0.1374328285 - - PREDICTED: serine hydroxymethyltransferase, mitochondrial [Jatropha curcas]
11 Hb_007595_050 0.1414395078 - - hypothetical chloroplast RF2 [Hevea brasiliensis]
12 Hb_000367_220 0.1414967108 - - hypothetical protein RCOM_1470580 [Ricinus communis]
13 Hb_000029_380 0.1424318093 - - conserved hypothetical protein [Ricinus communis]
14 Hb_011900_020 0.1432113419 - - PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Jatropha curcas]
15 Hb_000992_090 0.1457363399 transcription factor TF Family: Orphans CIL, putative [Ricinus communis]
16 Hb_012940_020 0.146781178 - - zeaxanthin epoxidase, putative [Ricinus communis]
17 Hb_001295_080 0.1487476026 - - Protein KES1, putative [Ricinus communis]
18 Hb_006816_040 0.1509120591 - - PREDICTED: pentatricopeptide repeat-containing protein At5g48910-like [Jatropha curcas]
19 Hb_003905_030 0.151389461 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
20 Hb_000359_160 0.1525356528 - - PREDICTED: protein CAJ1 [Jatropha curcas]

Gene co-expression network

sample Hb_003944_010 Hb_003944_010 Hb_156850_020 Hb_156850_020 Hb_003944_010--Hb_156850_020 Hb_007595_020 Hb_007595_020 Hb_003944_010--Hb_007595_020 Hb_010080_070 Hb_010080_070 Hb_003944_010--Hb_010080_070 Hb_005779_090 Hb_005779_090 Hb_003944_010--Hb_005779_090 Hb_007201_010 Hb_007201_010 Hb_003944_010--Hb_007201_010 Hb_185274_010 Hb_185274_010 Hb_003944_010--Hb_185274_010 Hb_106552_030 Hb_106552_030 Hb_156850_020--Hb_106552_030 Hb_156850_020--Hb_010080_070 Hb_028960_010 Hb_028960_010 Hb_156850_020--Hb_028960_010 Hb_012940_020 Hb_012940_020 Hb_156850_020--Hb_012940_020 Hb_011900_020 Hb_011900_020 Hb_156850_020--Hb_011900_020 Hb_000359_070 Hb_000359_070 Hb_156850_020--Hb_000359_070 Hb_068804_110 Hb_068804_110 Hb_007595_020--Hb_068804_110 Hb_000367_220 Hb_000367_220 Hb_007595_020--Hb_000367_220 Hb_002044_070 Hb_002044_070 Hb_007595_020--Hb_002044_070 Hb_005228_060 Hb_005228_060 Hb_007595_020--Hb_005228_060 Hb_000009_470 Hb_000009_470 Hb_007595_020--Hb_000009_470 Hb_029622_060 Hb_029622_060 Hb_007595_020--Hb_029622_060 Hb_001517_060 Hb_001517_060 Hb_010080_070--Hb_001517_060 Hb_010080_070--Hb_000009_470 Hb_000992_090 Hb_000992_090 Hb_010080_070--Hb_000992_090 Hb_010080_070--Hb_106552_030 Hb_000107_540 Hb_000107_540 Hb_010080_070--Hb_000107_540 Hb_000359_160 Hb_000359_160 Hb_005779_090--Hb_000359_160 Hb_063718_010 Hb_063718_010 Hb_005779_090--Hb_063718_010 Hb_007413_030 Hb_007413_030 Hb_005779_090--Hb_007413_030 Hb_013420_060 Hb_013420_060 Hb_005779_090--Hb_013420_060 Hb_004117_320 Hb_004117_320 Hb_005779_090--Hb_004117_320 Hb_004374_090 Hb_004374_090 Hb_007201_010--Hb_004374_090 Hb_003905_030 Hb_003905_030 Hb_007201_010--Hb_003905_030 Hb_000360_010 Hb_000360_010 Hb_007201_010--Hb_000360_010 Hb_007201_010--Hb_010080_070 Hb_001081_050 Hb_001081_050 Hb_007201_010--Hb_001081_050 Hb_005399_050 Hb_005399_050 Hb_185274_010--Hb_005399_050 Hb_005399_040 Hb_005399_040 Hb_185274_010--Hb_005399_040 Hb_185274_010--Hb_000992_090 Hb_185274_010--Hb_106552_030 Hb_000261_390 Hb_000261_390 Hb_185274_010--Hb_000261_390 Hb_000029_390 Hb_000029_390 Hb_185274_010--Hb_000029_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.313372 1.16215 1.97454 1.69328 0.0737334 0.321928
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.208667 0.0205261 0.0983183 0.0772982 13.4683

CAGE analysis