Hb_003947_040

Information

Type -
Description -
Location Contig3947: 34355-38838
Sequence    

Annotation

kegg
ID tcc:TCM_028924
description Leucine-rich repeat transmembrane protein kinase protein, putative
nr
ID XP_007024354.1
description Leucine-rich repeat transmembrane protein kinase protein, putative [Theobroma cacao]
swissprot
ID C0LGV0
description Probable LRR receptor-like serine/threonine-protein kinase At5g48740 OS=Arabidopsis thaliana GN=At5g48740 PE=2 SV=1
trembl
ID A0A061GBL2
description Leucine-rich repeat transmembrane protein kinase protein, putative OS=Theobroma cacao GN=TCM_028924 PE=3 SV=1
Gene Ontology
ID GO:0016301
description leucine-rich repeat transmembrane protein kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003947_040 0.0 - - Leucine-rich repeat transmembrane protein kinase protein, putative [Theobroma cacao]
2 Hb_000172_190 0.1821170952 - - PREDICTED: uncharacterized protein LOC105650824 [Jatropha curcas]
3 Hb_000061_090 0.1941459102 - - hypothetical protein B456_003G0981001, partial [Gossypium raimondii]
4 Hb_000879_190 0.210288507 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000675_060 0.2302394017 - - cytochrome P450, putative [Ricinus communis]
6 Hb_000828_050 0.2386394332 - - unnamed protein product [Vitis vinifera]
7 Hb_001699_200 0.2414448801 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic [Jatropha curcas]
8 Hb_002539_020 0.242468083 - - hypothetical protein CISIN_1g007216mg [Citrus sinensis]
9 Hb_000011_290 0.2439960877 - - PREDICTED: alanine aminotransferase 2-like [Jatropha curcas]
10 Hb_007199_010 0.2515009939 - - PREDICTED: protein kinase APK1A, chloroplastic [Nelumbo nucifera]
11 Hb_158092_060 0.2544916217 - - aspartate semialdehyde dehydrogenase, putative [Ricinus communis]
12 Hb_007423_020 0.2555559624 - - 2-nitropropane dioxygenase precursor, putative [Ricinus communis]
13 Hb_000453_240 0.2562397944 rubber biosynthesis Gene Name: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase [Hevea brasiliensis]
14 Hb_006538_190 0.2599781396 - - PREDICTED: homocysteine S-methyltransferase 1 isoform X1 [Jatropha curcas]
15 Hb_007439_010 0.2616593109 transcription factor TF Family: MYB-related PREDICTED: transcription factor RAX2-like [Populus euphratica]
16 Hb_001004_100 0.265300109 - - ATP binding protein, putative [Ricinus communis]
17 Hb_002233_040 0.2718471126 - - PREDICTED: uncharacterized protein LOC105629659 [Jatropha curcas]
18 Hb_004800_170 0.2730914072 - - PREDICTED: cytochrome P450 90B1 [Jatropha curcas]
19 Hb_017170_030 0.2733056566 - - PREDICTED: acyl-coenzyme A oxidase 3, peroxisomal-like [Jatropha curcas]
20 Hb_003592_030 0.2740468584 - - PREDICTED: dCTP pyrophosphatase 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_003947_040 Hb_003947_040 Hb_000172_190 Hb_000172_190 Hb_003947_040--Hb_000172_190 Hb_000061_090 Hb_000061_090 Hb_003947_040--Hb_000061_090 Hb_000879_190 Hb_000879_190 Hb_003947_040--Hb_000879_190 Hb_000675_060 Hb_000675_060 Hb_003947_040--Hb_000675_060 Hb_000828_050 Hb_000828_050 Hb_003947_040--Hb_000828_050 Hb_001699_200 Hb_001699_200 Hb_003947_040--Hb_001699_200 Hb_000172_190--Hb_000828_050 Hb_010815_020 Hb_010815_020 Hb_000172_190--Hb_010815_020 Hb_000031_260 Hb_000031_260 Hb_000172_190--Hb_000031_260 Hb_000345_250 Hb_000345_250 Hb_000172_190--Hb_000345_250 Hb_004897_010 Hb_004897_010 Hb_000172_190--Hb_004897_010 Hb_000414_110 Hb_000414_110 Hb_000061_090--Hb_000414_110 Hb_000061_090--Hb_000879_190 Hb_007423_020 Hb_007423_020 Hb_000061_090--Hb_007423_020 Hb_000011_290 Hb_000011_290 Hb_000061_090--Hb_000011_290 Hb_002539_020 Hb_002539_020 Hb_000061_090--Hb_002539_020 Hb_000165_210 Hb_000165_210 Hb_000879_190--Hb_000165_210 Hb_000879_190--Hb_000414_110 Hb_004800_170 Hb_004800_170 Hb_000879_190--Hb_004800_170 Hb_158092_060 Hb_158092_060 Hb_000879_190--Hb_158092_060 Hb_000879_190--Hb_001699_200 Hb_000675_060--Hb_158092_060 Hb_000675_060--Hb_000061_090 Hb_001004_100 Hb_001004_100 Hb_000675_060--Hb_001004_100 Hb_002471_260 Hb_002471_260 Hb_000675_060--Hb_002471_260 Hb_003592_030 Hb_003592_030 Hb_000675_060--Hb_003592_030 Hb_004136_030 Hb_004136_030 Hb_000828_050--Hb_004136_030 Hb_000252_110 Hb_000252_110 Hb_000828_050--Hb_000252_110 Hb_007199_010 Hb_007199_010 Hb_000828_050--Hb_007199_010 Hb_001621_010 Hb_001621_010 Hb_000828_050--Hb_001621_010 Hb_015690_010 Hb_015690_010 Hb_000828_050--Hb_015690_010 Hb_001699_200--Hb_000011_290 Hb_000614_170 Hb_000614_170 Hb_001699_200--Hb_000614_170 Hb_000320_300 Hb_000320_300 Hb_001699_200--Hb_000320_300 Hb_100147_010 Hb_100147_010 Hb_001699_200--Hb_100147_010 Hb_005873_010 Hb_005873_010 Hb_001699_200--Hb_005873_010 Hb_001971_060 Hb_001971_060 Hb_001699_200--Hb_001971_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00606129 0.0169302 0.0387207 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0667875 0.052555 0.0250737 0.203405 0.0559201

CAGE analysis