Hb_003948_020

Information

Type -
Description -
Location Contig3948: 16810-25088
Sequence    

Annotation

kegg
ID rcu:RCOM_0742130
description hypothetical protein
nr
ID XP_012077039.1
description PREDICTED: transmembrane protein 41B [Jatropha curcas]
swissprot
ID Q55909
description TVP38/TMEM64 family membrane protein slr0305 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0305 PE=3 SV=1
trembl
ID A0A067LAW0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17218 PE=4 SV=1
Gene Ontology
ID GO:0009507
description transmembrane protein 41b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39493: 16831-25013
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003948_020 0.0 - - PREDICTED: transmembrane protein 41B [Jatropha curcas]
2 Hb_002411_100 0.0621574458 - - PREDICTED: uncharacterized protein LOC105631266 [Jatropha curcas]
3 Hb_000045_050 0.083627449 - - PREDICTED: probable zinc metalloprotease EGY2, chloroplastic [Jatropha curcas]
4 Hb_003664_030 0.0881753439 - - PREDICTED: mitochondrial carnitine/acylcarnitine carrier-like protein [Jatropha curcas]
5 Hb_010557_010 0.0904253782 - - PREDICTED: 50S ribosomal protein L3, chloroplastic [Jatropha curcas]
6 Hb_000061_250 0.091770205 - - hypothetical protein JCGZ_11665 [Jatropha curcas]
7 Hb_000264_280 0.0933913195 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Jatropha curcas]
8 Hb_000108_150 0.0963950621 - - alpha/beta hydrolase, putative [Ricinus communis]
9 Hb_003549_140 0.0990540084 - - Thylakoid lumenal 21.5 kDa protein, chloroplast precursor, putative [Ricinus communis]
10 Hb_006829_080 0.1020522851 - - PREDICTED: protein LHCP TRANSLOCATION DEFECT [Jatropha curcas]
11 Hb_000442_070 0.1054474011 - - PREDICTED: uncharacterized protein LOC105645538 [Jatropha curcas]
12 Hb_005784_030 0.1063311301 - - PREDICTED: uncharacterized protein LOC105645162 isoform X2 [Jatropha curcas]
13 Hb_005563_040 0.1086900094 - - PREDICTED: uncharacterized protein LOC105630105 isoform X1 [Jatropha curcas]
14 Hb_000473_050 0.1090492832 - - chromatin regulatory protein sir2, putative [Ricinus communis]
15 Hb_000032_390 0.1095790262 - - PREDICTED: uncharacterized protein LOC105645663 [Jatropha curcas]
16 Hb_000803_170 0.1096857009 - - PREDICTED: uncharacterized protein LOC105648312 [Jatropha curcas]
17 Hb_005181_120 0.1119430926 - - PREDICTED: psbB mRNA maturation factor Mbb1, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_000390_210 0.1129021845 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
19 Hb_004459_060 0.1130409202 - - 50S ribosomal protein L34, chloroplast precursor, putative [Ricinus communis]
20 Hb_000684_200 0.113347279 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_003948_020 Hb_003948_020 Hb_002411_100 Hb_002411_100 Hb_003948_020--Hb_002411_100 Hb_000045_050 Hb_000045_050 Hb_003948_020--Hb_000045_050 Hb_003664_030 Hb_003664_030 Hb_003948_020--Hb_003664_030 Hb_010557_010 Hb_010557_010 Hb_003948_020--Hb_010557_010 Hb_000061_250 Hb_000061_250 Hb_003948_020--Hb_000061_250 Hb_000264_280 Hb_000264_280 Hb_003948_020--Hb_000264_280 Hb_002411_100--Hb_010557_010 Hb_000703_070 Hb_000703_070 Hb_002411_100--Hb_000703_070 Hb_001047_180 Hb_001047_180 Hb_002411_100--Hb_001047_180 Hb_004459_060 Hb_004459_060 Hb_002411_100--Hb_004459_060 Hb_005563_040 Hb_005563_040 Hb_002411_100--Hb_005563_040 Hb_000045_050--Hb_000061_250 Hb_000108_150 Hb_000108_150 Hb_000045_050--Hb_000108_150 Hb_000544_080 Hb_000544_080 Hb_000045_050--Hb_000544_080 Hb_002811_250 Hb_002811_250 Hb_000045_050--Hb_002811_250 Hb_005181_120 Hb_005181_120 Hb_000045_050--Hb_005181_120 Hb_003664_030--Hb_000264_280 Hb_005784_030 Hb_005784_030 Hb_003664_030--Hb_005784_030 Hb_148146_010 Hb_148146_010 Hb_003664_030--Hb_148146_010 Hb_003752_090 Hb_003752_090 Hb_003664_030--Hb_003752_090 Hb_000834_060 Hb_000834_060 Hb_003664_030--Hb_000834_060 Hb_010557_010--Hb_002811_250 Hb_010557_010--Hb_000703_070 Hb_000803_170 Hb_000803_170 Hb_010557_010--Hb_000803_170 Hb_009393_130 Hb_009393_130 Hb_010557_010--Hb_009393_130 Hb_010557_010--Hb_000045_050 Hb_000061_250--Hb_000108_150 Hb_000061_250--Hb_000544_080 Hb_000061_250--Hb_000264_280 Hb_000390_210 Hb_000390_210 Hb_000061_250--Hb_000390_210 Hb_000264_280--Hb_000108_150 Hb_001269_500 Hb_001269_500 Hb_000264_280--Hb_001269_500 Hb_001649_030 Hb_001649_030 Hb_000264_280--Hb_001649_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.41579 15.2239 119.642 59.3842 8.52347 7.70014
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.8754 17.4179 14.5579 9.2657 145.375

CAGE analysis