Hb_003952_050

Information

Type -
Description -
Location Contig3952: 45373-49403
Sequence    

Annotation

kegg
ID rcu:RCOM_0840130
description beta-galactosidase, putative (EC:3.2.1.23)
nr
ID XP_002528629.1
description beta-galactosidase, putative [Ricinus communis]
swissprot
ID Q9SCV5
description Beta-galactosidase 7 OS=Arabidopsis thaliana GN=BGAL7 PE=2 SV=2
trembl
ID B9SRL0
description Beta-galactosidase OS=Ricinus communis GN=RCOM_0840130 PE=3 SV=1
Gene Ontology
ID GO:0004565
description beta-galactosidase 15-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003952_050 0.0 - - beta-galactosidase, putative [Ricinus communis]
2 Hb_002686_060 0.1549912323 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000890_110 0.1857399838 - - PREDICTED: GTP-binding protein OBGC, chloroplastic [Populus euphratica]
4 Hb_001369_700 0.1878743025 - - -
5 Hb_000012_010 0.1880144956 - - hypothetical protein JCGZ_07709 [Jatropha curcas]
6 Hb_011053_020 0.1935276558 - - lipoic acid synthetase, putative [Ricinus communis]
7 Hb_000038_020 0.2016758759 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Jatropha curcas]
8 Hb_000699_080 0.2021915216 - - PREDICTED: rubisco accumulation factor 1, chloroplastic [Jatropha curcas]
9 Hb_000120_900 0.2031600997 - - catalase [Hevea brasiliensis]
10 Hb_003336_020 0.2053701192 - - PREDICTED: probable sodium/metabolite cotransporter BASS3, chloroplastic [Vitis vinifera]
11 Hb_000012_440 0.2055731761 - - PREDICTED: uncharacterized protein LOC104248335 [Nicotiana sylvestris]
12 Hb_000667_140 0.208472221 - - PREDICTED: uridine kinase-like protein 3 isoform X1 [Jatropha curcas]
13 Hb_007002_010 0.2159177789 - - PREDICTED: dnaJ protein ERDJ3B [Jatropha curcas]
14 Hb_000329_520 0.2182002402 - - PREDICTED: metalloendoproteinase 1 [Jatropha curcas]
15 Hb_002534_030 0.2213272042 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
16 Hb_005588_110 0.2224045728 - - hypothetical protein POPTR_0002s12860g [Populus trichocarpa]
17 Hb_000359_070 0.2241734497 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Jatropha curcas]
18 Hb_004987_030 0.2252843637 - - PREDICTED: uncharacterized protein LOC105632434 [Jatropha curcas]
19 Hb_000473_060 0.2297745195 - - PREDICTED: psbP domain-containing protein 2, chloroplastic [Jatropha curcas]
20 Hb_002304_180 0.2297863329 - - PREDICTED: magnesium-chelatase subunit ChlI, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_003952_050 Hb_003952_050 Hb_002686_060 Hb_002686_060 Hb_003952_050--Hb_002686_060 Hb_000890_110 Hb_000890_110 Hb_003952_050--Hb_000890_110 Hb_001369_700 Hb_001369_700 Hb_003952_050--Hb_001369_700 Hb_000012_010 Hb_000012_010 Hb_003952_050--Hb_000012_010 Hb_011053_020 Hb_011053_020 Hb_003952_050--Hb_011053_020 Hb_000038_020 Hb_000038_020 Hb_003952_050--Hb_000038_020 Hb_000699_080 Hb_000699_080 Hb_002686_060--Hb_000699_080 Hb_002686_060--Hb_000038_020 Hb_003336_020 Hb_003336_020 Hb_002686_060--Hb_003336_020 Hb_002686_060--Hb_000012_010 Hb_000359_070 Hb_000359_070 Hb_002686_060--Hb_000359_070 Hb_168031_020 Hb_168031_020 Hb_002686_060--Hb_168031_020 Hb_007002_010 Hb_007002_010 Hb_000890_110--Hb_007002_010 Hb_000683_080 Hb_000683_080 Hb_000890_110--Hb_000683_080 Hb_158144_020 Hb_158144_020 Hb_000890_110--Hb_158144_020 Hb_000890_110--Hb_000038_020 Hb_000352_220 Hb_000352_220 Hb_000890_110--Hb_000352_220 Hb_000890_110--Hb_168031_020 Hb_001369_700--Hb_011053_020 Hb_000473_060 Hb_000473_060 Hb_001369_700--Hb_000473_060 Hb_000023_210 Hb_000023_210 Hb_001369_700--Hb_000023_210 Hb_001369_700--Hb_007002_010 Hb_183963_010 Hb_183963_010 Hb_001369_700--Hb_183963_010 Hb_001369_700--Hb_000012_010 Hb_002304_180 Hb_002304_180 Hb_000012_010--Hb_002304_180 Hb_000012_010--Hb_011053_020 Hb_000189_520 Hb_000189_520 Hb_000012_010--Hb_000189_520 Hb_000012_010--Hb_000023_210 Hb_000667_140 Hb_000667_140 Hb_000012_010--Hb_000667_140 Hb_000866_050 Hb_000866_050 Hb_000012_010--Hb_000866_050 Hb_011053_020--Hb_183963_010 Hb_011053_020--Hb_007002_010 Hb_011053_020--Hb_000023_210 Hb_011053_020--Hb_000866_050 Hb_011053_020--Hb_000189_520 Hb_000038_020--Hb_000667_140 Hb_000038_020--Hb_168031_020 Hb_000038_020--Hb_000359_070 Hb_005332_150 Hb_005332_150 Hb_000038_020--Hb_005332_150 Hb_003427_080 Hb_003427_080 Hb_000038_020--Hb_003427_080 Hb_000069_370 Hb_000069_370 Hb_000038_020--Hb_000069_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0125239 0.0343828 0.0592941 0.00711396 0.0408421
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0344979 0.0135731 0.0517742 0.0107781 0.432982

CAGE analysis