Hb_003952_060

Information

Type -
Description -
Location Contig3952: 50584-53327
Sequence    

Annotation

kegg
ID pop:POPTR_0016s11000g
description POPTRDRAFT_907558; hypothetical protein
nr
ID XP_002323489.2
description hypothetical protein POPTR_0016s11000g [Populus trichocarpa]
swissprot
ID Q9FFN1
description Pentatricopeptide repeat-containing protein At5g03800 OS=Arabidopsis thaliana GN=EMB175 PE=2 SV=1
trembl
ID B9IFS7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s11000g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39539: 50386-52099
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003952_060 0.0 - - hypothetical protein POPTR_0016s11000g [Populus trichocarpa]
2 Hb_000087_140 0.1006097253 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27270 isoform X1 [Jatropha curcas]
3 Hb_001435_030 0.1065184091 - - PREDICTED: uncharacterized protein LOC105645073 [Jatropha curcas]
4 Hb_002217_260 0.1124406518 - - PREDICTED: uncharacterized protein LOC105643577 [Jatropha curcas]
5 Hb_036790_080 0.1129682444 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 39 [Jatropha curcas]
6 Hb_001163_060 0.1159626418 - - neutral/alkaline invertase [Manihot esculenta]
7 Hb_002055_040 0.1199074807 - - PREDICTED: large subunit GTPase 1 homolog [Jatropha curcas]
8 Hb_001671_010 0.120030971 - - PREDICTED: U-box domain-containing protein 44-like [Jatropha curcas]
9 Hb_004398_030 0.1204365449 - - PREDICTED: chloroplast processing peptidase [Jatropha curcas]
10 Hb_001498_010 0.1205114367 - - PREDICTED: uncharacterized protein LOC105648994 [Jatropha curcas]
11 Hb_001790_080 0.121791151 - - PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic isoform X3 [Jatropha curcas]
12 Hb_006274_050 0.1233826112 - - hypothetical protein VITISV_022618 [Vitis vinifera]
13 Hb_001259_020 0.1236794077 - - PREDICTED: translocase of chloroplast 90, chloroplastic [Jatropha curcas]
14 Hb_000883_060 0.1246444206 transcription factor TF Family: SNF2 PREDICTED: SNF2 domain-containing protein CLASSY 3-like [Jatropha curcas]
15 Hb_000204_120 0.125866777 - - PREDICTED: uncharacterized protein LOC105639239 [Jatropha curcas]
16 Hb_000184_170 0.1260114083 - - hypothetical protein RCOM_1213430 [Ricinus communis]
17 Hb_000627_250 0.1261928173 - - PREDICTED: uncharacterized protein LOC105632682 isoform X1 [Jatropha curcas]
18 Hb_000365_240 0.1263310203 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33A-like [Jatropha curcas]
19 Hb_001322_140 0.1267794215 - - PREDICTED: 50S ribosomal protein L19-1, chloroplastic [Jatropha curcas]
20 Hb_007922_020 0.1267945551 - - PREDICTED: uncharacterized protein LOC105646505 [Jatropha curcas]

Gene co-expression network

sample Hb_003952_060 Hb_003952_060 Hb_000087_140 Hb_000087_140 Hb_003952_060--Hb_000087_140 Hb_001435_030 Hb_001435_030 Hb_003952_060--Hb_001435_030 Hb_002217_260 Hb_002217_260 Hb_003952_060--Hb_002217_260 Hb_036790_080 Hb_036790_080 Hb_003952_060--Hb_036790_080 Hb_001163_060 Hb_001163_060 Hb_003952_060--Hb_001163_060 Hb_002055_040 Hb_002055_040 Hb_003952_060--Hb_002055_040 Hb_001790_080 Hb_001790_080 Hb_000087_140--Hb_001790_080 Hb_000087_140--Hb_036790_080 Hb_000130_320 Hb_000130_320 Hb_000087_140--Hb_000130_320 Hb_000349_240 Hb_000349_240 Hb_000087_140--Hb_000349_240 Hb_000087_140--Hb_001435_030 Hb_001435_030--Hb_036790_080 Hb_000261_060 Hb_000261_060 Hb_001435_030--Hb_000261_060 Hb_000027_190 Hb_000027_190 Hb_001435_030--Hb_000027_190 Hb_001435_030--Hb_002055_040 Hb_005253_030 Hb_005253_030 Hb_001435_030--Hb_005253_030 Hb_003467_030 Hb_003467_030 Hb_001435_030--Hb_003467_030 Hb_000462_090 Hb_000462_090 Hb_002217_260--Hb_000462_090 Hb_001584_200 Hb_001584_200 Hb_002217_260--Hb_001584_200 Hb_002217_260--Hb_036790_080 Hb_009775_010 Hb_009775_010 Hb_002217_260--Hb_009775_010 Hb_000080_120 Hb_000080_120 Hb_002217_260--Hb_000080_120 Hb_021346_030 Hb_021346_030 Hb_002217_260--Hb_021346_030 Hb_036790_080--Hb_005253_030 Hb_032920_050 Hb_032920_050 Hb_036790_080--Hb_032920_050 Hb_036790_080--Hb_000261_060 Hb_003020_030 Hb_003020_030 Hb_036790_080--Hb_003020_030 Hb_036790_080--Hb_000130_320 Hb_000445_090 Hb_000445_090 Hb_001163_060--Hb_000445_090 Hb_000193_330 Hb_000193_330 Hb_001163_060--Hb_000193_330 Hb_002769_030 Hb_002769_030 Hb_001163_060--Hb_002769_030 Hb_000365_240 Hb_000365_240 Hb_001163_060--Hb_000365_240 Hb_000599_270 Hb_000599_270 Hb_001163_060--Hb_000599_270 Hb_004003_040 Hb_004003_040 Hb_001163_060--Hb_004003_040 Hb_002099_080 Hb_002099_080 Hb_002055_040--Hb_002099_080 Hb_002055_040--Hb_000365_240 Hb_011228_010 Hb_011228_010 Hb_002055_040--Hb_011228_010 Hb_000039_150 Hb_000039_150 Hb_002055_040--Hb_000039_150 Hb_007820_010 Hb_007820_010 Hb_002055_040--Hb_007820_010 Hb_000388_090 Hb_000388_090 Hb_002055_040--Hb_000388_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.44993 5.95259 7.11407 3.92729 4.98647 10.9505
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.42313 5.83129 10.8231 5.20325 19.7105

CAGE analysis