Hb_003952_070

Information

Type -
Description -
Location Contig3952: 53787-73593
Sequence    

Annotation

kegg
ID rcu:RCOM_0840110
description ubiquitin-protein ligase, putative
nr
ID XP_002528627.1
description ubiquitin-protein ligase, putative [Ricinus communis]
swissprot
ID Q9SCQ2
description E3 ubiquitin-protein ligase UPL7 OS=Arabidopsis thaliana GN=UPL7 PE=2 SV=1
trembl
ID B9SRK8
description Ubiquitin-protein ligase, putative OS=Ricinus communis GN=RCOM_0840110 PE=4 SV=1
Gene Ontology
ID GO:0004842
description e3 ubiquitin-protein ligase upl7 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39540: 52270-52904 , PASA_asmbl_39541: 54135-55911 , PASA_asmbl_39542: 56057-57979 , PASA_asmbl_39545: 64472-64714 , PASA_asmbl_39546: 65494-65737 , PASA_asmbl_39548: 69795-70211 , PASA_asmbl_39549: 71331-72450 , PASA_asmbl_39550: 72046-72219
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003952_070 0.0 - - ubiquitin-protein ligase, putative [Ricinus communis]
2 Hb_004881_020 0.055766465 - - PREDICTED: serine/threonine-protein kinase rio2-like [Jatropha curcas]
3 Hb_006252_040 0.0570848097 - - queuine tRNA-ribosyltransferase, putative [Ricinus communis]
4 Hb_007594_130 0.0572907373 - - PREDICTED: lysophospholipid acyltransferase LPEAT2 isoform X1 [Jatropha curcas]
5 Hb_000538_100 0.0618888902 - - conserved hypothetical protein [Ricinus communis]
6 Hb_005276_210 0.0621617953 - - PREDICTED: DNA repair helicase UVH6 isoform X2 [Jatropha curcas]
7 Hb_001489_150 0.0628070088 - - PREDICTED: uncharacterized protein LOC105123623 isoform X2 [Populus euphratica]
8 Hb_000085_160 0.0637147142 - - hypothetical protein CICLE_v10009012mg [Citrus clementina]
9 Hb_001579_320 0.0650703768 - - pyroglutamyl-peptidase I, putative [Ricinus communis]
10 Hb_001006_140 0.0657209461 transcription factor TF Family: SNF2 PREDICTED: protein CHROMATIN REMODELING 19 isoform X2 [Jatropha curcas]
11 Hb_023386_040 0.0657503003 - - PREDICTED: chaperone protein dnaJ 13-like [Populus euphratica]
12 Hb_000193_190 0.0659988902 - - PREDICTED: dnaJ homolog subfamily C member 16 [Jatropha curcas]
13 Hb_000038_170 0.0669101765 - - PREDICTED: SCY1-like protein 2 [Jatropha curcas]
14 Hb_007317_110 0.0675894268 - - PREDICTED: uncharacterized RNA-binding protein C660.15-like [Jatropha curcas]
15 Hb_142439_010 0.0680047417 - - PREDICTED: F-box/kelch-repeat protein OR23 [Jatropha curcas]
16 Hb_004577_020 0.0696704262 - - PREDICTED: MOB kinase activator-like 1 [Jatropha curcas]
17 Hb_000051_070 0.0705760565 - - PREDICTED: uncharacterized protein LOC105650959 [Jatropha curcas]
18 Hb_016898_010 0.0713813639 - - PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]
19 Hb_004310_150 0.0717225869 - - PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein [Vitis vinifera]
20 Hb_001486_340 0.0728673928 - - PREDICTED: double-stranded RNA-binding protein 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_003952_070 Hb_003952_070 Hb_004881_020 Hb_004881_020 Hb_003952_070--Hb_004881_020 Hb_006252_040 Hb_006252_040 Hb_003952_070--Hb_006252_040 Hb_007594_130 Hb_007594_130 Hb_003952_070--Hb_007594_130 Hb_000538_100 Hb_000538_100 Hb_003952_070--Hb_000538_100 Hb_005276_210 Hb_005276_210 Hb_003952_070--Hb_005276_210 Hb_001489_150 Hb_001489_150 Hb_003952_070--Hb_001489_150 Hb_004881_020--Hb_007594_130 Hb_004881_020--Hb_006252_040 Hb_000212_240 Hb_000212_240 Hb_004881_020--Hb_000212_240 Hb_103012_010 Hb_103012_010 Hb_004881_020--Hb_103012_010 Hb_002671_100 Hb_002671_100 Hb_004881_020--Hb_002671_100 Hb_000820_170 Hb_000820_170 Hb_006252_040--Hb_000820_170 Hb_023386_040 Hb_023386_040 Hb_006252_040--Hb_023386_040 Hb_006252_040--Hb_000538_100 Hb_016898_010 Hb_016898_010 Hb_006252_040--Hb_016898_010 Hb_007594_130--Hb_002671_100 Hb_007594_130--Hb_000212_240 Hb_003030_070 Hb_003030_070 Hb_007594_130--Hb_003030_070 Hb_040262_010 Hb_040262_010 Hb_007594_130--Hb_040262_010 Hb_006827_020 Hb_006827_020 Hb_000538_100--Hb_006827_020 Hb_007317_110 Hb_007317_110 Hb_000538_100--Hb_007317_110 Hb_000538_100--Hb_103012_010 Hb_002304_090 Hb_002304_090 Hb_000538_100--Hb_002304_090 Hb_000034_100 Hb_000034_100 Hb_005276_210--Hb_000034_100 Hb_054865_100 Hb_054865_100 Hb_005276_210--Hb_054865_100 Hb_000300_060 Hb_000300_060 Hb_005276_210--Hb_000300_060 Hb_002477_280 Hb_002477_280 Hb_005276_210--Hb_002477_280 Hb_066182_010 Hb_066182_010 Hb_005276_210--Hb_066182_010 Hb_005291_030 Hb_005291_030 Hb_001489_150--Hb_005291_030 Hb_004032_150 Hb_004032_150 Hb_001489_150--Hb_004032_150 Hb_000808_270 Hb_000808_270 Hb_001489_150--Hb_000808_270 Hb_007416_280 Hb_007416_280 Hb_001489_150--Hb_007416_280 Hb_001638_170 Hb_001638_170 Hb_001489_150--Hb_001638_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.19062 3.62428 2.17206 2.70448 5.54048 6.45787
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.67651 4.12389 2.95166 3.45493 2.30723

CAGE analysis