Hb_003952_090

Information

Type -
Description -
Location Contig3952: 77390-82260
Sequence    

Annotation

kegg
ID rcu:RCOM_0839990
description threonine dehydratase/deaminase, putative (EC:4.3.1.19)
nr
ID XP_012082524.1
description PREDICTED: threonine dehydratase biosynthetic, chloroplastic [Jatropha curcas]
swissprot
ID Q9ZSS6
description Threonine dehydratase biosynthetic, chloroplastic OS=Arabidopsis thaliana GN=OMR1 PE=1 SV=1
trembl
ID A0A067K2J0
description Threonine dehydratase OS=Jatropha curcas GN=JCGZ_16612 PE=3 SV=1
Gene Ontology
ID GO:0004794
description threonine dehydratase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39554: 77457-82198
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003952_090 0.0 - - PREDICTED: threonine dehydratase biosynthetic, chloroplastic [Jatropha curcas]
2 Hb_002477_280 0.07010798 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-2 [Jatropha curcas]
3 Hb_001481_090 0.0702909557 - - PREDICTED: transcriptional regulator ATRX homolog [Jatropha curcas]
4 Hb_001369_220 0.0734725248 - - PREDICTED: structural maintenance of chromosomes protein 6B-like isoform X2 [Jatropha curcas]
5 Hb_001766_110 0.0758102027 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [Jatropha curcas]
6 Hb_002759_150 0.0768807526 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 22 isoform X1 [Jatropha curcas]
7 Hb_018838_030 0.0822733805 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000085_050 0.0838833104 - - PREDICTED: grpE protein homolog, mitochondrial isoform X1 [Jatropha curcas]
9 Hb_000041_270 0.0880883581 - - PREDICTED: mitochondrial import receptor subunit TOM40-1 [Jatropha curcas]
10 Hb_005694_110 0.0889927875 - - hypothetical protein PRUPE_ppa008137mg [Prunus persica]
11 Hb_001226_160 0.0903620293 - - PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform X1 [Jatropha curcas]
12 Hb_120327_010 0.0904510532 - - PREDICTED: uncharacterized protein LOC105650959 [Jatropha curcas]
13 Hb_001242_060 0.0915142463 - - PREDICTED: uncharacterized protein LOC105139508 [Populus euphratica]
14 Hb_000827_070 0.0917508204 desease resistance Gene Name: NB-ARC PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
15 Hb_000465_460 0.0923551487 - - PREDICTED: U3 small nucleolar RNA-associated protein 25 [Jatropha curcas]
16 Hb_000656_400 0.0924575234 - - PREDICTED: transcription initiation factor TFIID subunit 9 [Jatropha curcas]
17 Hb_005357_030 0.0924690028 - - PREDICTED: pyruvate, phosphate dikinase regulatory protein 1, chloroplastic [Jatropha curcas]
18 Hb_007054_060 0.0933012846 - - -
19 Hb_000757_060 0.0934925325 - - hypothetical protein PRUPE_ppa001141mg [Prunus persica]
20 Hb_011609_100 0.0958864059 - - PREDICTED: 30S ribosomal protein 3, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_003952_090 Hb_003952_090 Hb_002477_280 Hb_002477_280 Hb_003952_090--Hb_002477_280 Hb_001481_090 Hb_001481_090 Hb_003952_090--Hb_001481_090 Hb_001369_220 Hb_001369_220 Hb_003952_090--Hb_001369_220 Hb_001766_110 Hb_001766_110 Hb_003952_090--Hb_001766_110 Hb_002759_150 Hb_002759_150 Hb_003952_090--Hb_002759_150 Hb_018838_030 Hb_018838_030 Hb_003952_090--Hb_018838_030 Hb_005276_210 Hb_005276_210 Hb_002477_280--Hb_005276_210 Hb_000085_160 Hb_000085_160 Hb_002477_280--Hb_000085_160 Hb_004310_150 Hb_004310_150 Hb_002477_280--Hb_004310_150 Hb_003525_010 Hb_003525_010 Hb_002477_280--Hb_003525_010 Hb_000300_060 Hb_000300_060 Hb_002477_280--Hb_000300_060 Hb_001481_090--Hb_001766_110 Hb_000041_270 Hb_000041_270 Hb_001481_090--Hb_000041_270 Hb_038172_010 Hb_038172_010 Hb_001481_090--Hb_038172_010 Hb_003126_080 Hb_003126_080 Hb_001481_090--Hb_003126_080 Hb_000656_400 Hb_000656_400 Hb_001481_090--Hb_000656_400 Hb_001369_220--Hb_002477_280 Hb_001369_220--Hb_001481_090 Hb_001369_220--Hb_000041_270 Hb_002205_040 Hb_002205_040 Hb_001369_220--Hb_002205_040 Hb_000959_210 Hb_000959_210 Hb_001369_220--Hb_000959_210 Hb_001766_110--Hb_000656_400 Hb_001766_110--Hb_003126_080 Hb_000251_130 Hb_000251_130 Hb_001766_110--Hb_000251_130 Hb_000085_050 Hb_000085_050 Hb_001766_110--Hb_000085_050 Hb_000465_460 Hb_000465_460 Hb_002759_150--Hb_000465_460 Hb_004837_240 Hb_004837_240 Hb_002759_150--Hb_004837_240 Hb_002759_150--Hb_001481_090 Hb_002759_150--Hb_001766_110 Hb_003992_240 Hb_003992_240 Hb_002759_150--Hb_003992_240 Hb_000210_180 Hb_000210_180 Hb_018838_030--Hb_000210_180 Hb_015292_030 Hb_015292_030 Hb_018838_030--Hb_015292_030 Hb_000032_290 Hb_000032_290 Hb_018838_030--Hb_000032_290 Hb_018838_030--Hb_000085_050 Hb_063090_010 Hb_063090_010 Hb_018838_030--Hb_063090_010 Hb_007441_200 Hb_007441_200 Hb_018838_030--Hb_007441_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
42.4134 37.8422 13.7675 18.1355 38.5025 41.2935
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.5804 64.9806 31.2637 34.1548 21.8426

CAGE analysis