Hb_003952_150

Information

Type -
Description -
Location Contig3952: 110403-117803
Sequence    

Annotation

kegg
ID tcc:TCM_022366
description F21M11.16 protein isoform 1
nr
ID XP_012082520.1
description PREDICTED: cactin [Jatropha curcas]
swissprot
ID F4I2J8
description Cactin OS=Arabidopsis thaliana GN=CTN PE=1 SV=1
trembl
ID A0A067KBR2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16608 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39556: 110480-117796
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003952_150 0.0 - - PREDICTED: cactin [Jatropha curcas]
2 Hb_016898_010 0.0572377233 - - PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]
3 Hb_000084_120 0.058562853 - - PREDICTED: pentatricopeptide repeat-containing protein At2g36240 [Jatropha curcas]
4 Hb_000920_210 0.0603972448 - - PREDICTED: uridine 5'-monophosphate synthase [Jatropha curcas]
5 Hb_003362_070 0.0634821012 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
6 Hb_010381_060 0.0643549097 - - DEAD-box ATP-dependent RNA helicase 20 -like protein [Gossypium arboreum]
7 Hb_000320_200 0.0651905541 - - PREDICTED: U3 small nucleolar RNA-associated protein 6 homolog [Jatropha curcas]
8 Hb_000300_440 0.0665733973 - - MIF4G domain and MA3 domain-containing protein isoform 1 [Theobroma cacao]
9 Hb_000743_040 0.0672390789 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
10 Hb_009175_020 0.067421691 - - PREDICTED: uncharacterized protein LOC101303140 [Fragaria vesca subsp. vesca]
11 Hb_048476_180 0.0679051227 - - PREDICTED: nuclear pore complex protein NUP155 [Jatropha curcas]
12 Hb_104061_020 0.0704198805 - - PREDICTED: UV-stimulated scaffold protein A homolog [Jatropha curcas]
13 Hb_106371_010 0.070725424 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
14 Hb_000190_120 0.0710773549 - - PREDICTED: uncharacterized protein LOC105649936 [Jatropha curcas]
15 Hb_000072_350 0.0713758333 - - PREDICTED: WPP domain-interacting tail-anchored protein 1 [Jatropha curcas]
16 Hb_002107_070 0.0720654479 - - hypothetical protein RCOM_1598630 [Ricinus communis]
17 Hb_002329_040 0.0739714189 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
18 Hb_006252_020 0.0741491998 - - PREDICTED: SET and MYND domain-containing protein 4 isoform X2 [Jatropha curcas]
19 Hb_002890_020 0.074400192 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 5 isoform X1 [Jatropha curcas]
20 Hb_001623_480 0.0752440712 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 13 [Jatropha curcas]

Gene co-expression network

sample Hb_003952_150 Hb_003952_150 Hb_016898_010 Hb_016898_010 Hb_003952_150--Hb_016898_010 Hb_000084_120 Hb_000084_120 Hb_003952_150--Hb_000084_120 Hb_000920_210 Hb_000920_210 Hb_003952_150--Hb_000920_210 Hb_003362_070 Hb_003362_070 Hb_003952_150--Hb_003362_070 Hb_010381_060 Hb_010381_060 Hb_003952_150--Hb_010381_060 Hb_000320_200 Hb_000320_200 Hb_003952_150--Hb_000320_200 Hb_016898_010--Hb_003362_070 Hb_016898_010--Hb_000084_120 Hb_000101_240 Hb_000101_240 Hb_016898_010--Hb_000101_240 Hb_048476_180 Hb_048476_180 Hb_016898_010--Hb_048476_180 Hb_003428_070 Hb_003428_070 Hb_016898_010--Hb_003428_070 Hb_000084_120--Hb_003362_070 Hb_004602_040 Hb_004602_040 Hb_000084_120--Hb_004602_040 Hb_000084_120--Hb_000101_240 Hb_000084_120--Hb_003428_070 Hb_001623_480 Hb_001623_480 Hb_000920_210--Hb_001623_480 Hb_000033_030 Hb_000033_030 Hb_000920_210--Hb_000033_030 Hb_000190_120 Hb_000190_120 Hb_000920_210--Hb_000190_120 Hb_000920_210--Hb_010381_060 Hb_025477_040 Hb_025477_040 Hb_000920_210--Hb_025477_040 Hb_004935_030 Hb_004935_030 Hb_003362_070--Hb_004935_030 Hb_003362_070--Hb_048476_180 Hb_003966_030 Hb_003966_030 Hb_003362_070--Hb_003966_030 Hb_000922_370 Hb_000922_370 Hb_003362_070--Hb_000922_370 Hb_003044_020 Hb_003044_020 Hb_003362_070--Hb_003044_020 Hb_003464_020 Hb_003464_020 Hb_010381_060--Hb_003464_020 Hb_000714_050 Hb_000714_050 Hb_010381_060--Hb_000714_050 Hb_000029_130 Hb_000029_130 Hb_010381_060--Hb_000029_130 Hb_000023_190 Hb_000023_190 Hb_010381_060--Hb_000023_190 Hb_009627_010 Hb_009627_010 Hb_010381_060--Hb_009627_010 Hb_001599_030 Hb_001599_030 Hb_010381_060--Hb_001599_030 Hb_000320_200--Hb_001599_030 Hb_002221_050 Hb_002221_050 Hb_000320_200--Hb_002221_050 Hb_000320_200--Hb_000714_050 Hb_000072_350 Hb_000072_350 Hb_000320_200--Hb_000072_350 Hb_000743_040 Hb_000743_040 Hb_000320_200--Hb_000743_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.7115 25.5372 12.9816 14.5675 42.3753 41.396
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.1382 17.5458 19.3227 32.1028 21.1831

CAGE analysis