Hb_003963_010

Information

Type -
Description -
Location Contig3963: 7711-12548
Sequence    

Annotation

kegg
ID rcu:RCOM_1564050
description hypothetical protein
nr
ID XP_002514395.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID O95243
description Methyl-CpG-binding domain protein 4 OS=Homo sapiens GN=MBD4 PE=1 SV=1
trembl
ID B9RKX6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1564050 PE=4 SV=1
Gene Ontology
ID GO:0005634
description dna glycosylase superfamily isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003963_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000680_160 0.0898106715 - - PREDICTED: protein FLX-like 3 [Jatropha curcas]
3 Hb_005194_010 0.0934191114 - - PREDICTED: casein kinase II subunit alpha [Jatropha curcas]
4 Hb_000032_270 0.0937120519 - - PREDICTED: F-box/LRR-repeat protein 13 [Jatropha curcas]
5 Hb_001828_060 0.0971619723 desease resistance Gene Name: AAA_31 nucleotide-binding protein, putative [Ricinus communis]
6 Hb_000107_330 0.0974349132 - - PREDICTED: pentatricopeptide repeat-containing protein At4g38150 [Jatropha curcas]
7 Hb_005305_080 0.0983643938 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform X1 [Jatropha curcas]
8 Hb_000062_220 0.0986622485 - - BnaC02g35870D [Brassica napus]
9 Hb_005618_170 0.1006602666 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
10 Hb_001828_190 0.1008006737 - - PREDICTED: phosducin-like protein 3 [Prunus mume]
11 Hb_000170_070 0.1015284292 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At4g08455 [Jatropha curcas]
12 Hb_002078_130 0.1037154396 - - PREDICTED: uncharacterized protein LOC105644797 [Jatropha curcas]
13 Hb_009558_030 0.1038160368 - - myb3r3, putative [Ricinus communis]
14 Hb_005725_250 0.1055232954 - - PREDICTED: uncharacterized protein LOC105630805 isoform X1 [Jatropha curcas]
15 Hb_007691_030 0.1061317236 desease resistance Gene Name: AAA PREDICTED: ATPase family AAA domain-containing protein 1-B [Jatropha curcas]
16 Hb_003058_190 0.1067815052 - - PREDICTED: uncharacterized protein LOC105628951 isoform X1 [Jatropha curcas]
17 Hb_002739_100 0.1073944374 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]
18 Hb_000300_060 0.1076143802 - - PREDICTED: F-box protein SKIP24 [Jatropha curcas]
19 Hb_001059_030 0.1088895668 - - PREDICTED: F-box protein At5g03100-like [Solanum lycopersicum]
20 Hb_000220_220 0.1092683982 - - PREDICTED: uncharacterized protein LOC105636907 [Jatropha curcas]

Gene co-expression network

sample Hb_003963_010 Hb_003963_010 Hb_000680_160 Hb_000680_160 Hb_003963_010--Hb_000680_160 Hb_005194_010 Hb_005194_010 Hb_003963_010--Hb_005194_010 Hb_000032_270 Hb_000032_270 Hb_003963_010--Hb_000032_270 Hb_001828_060 Hb_001828_060 Hb_003963_010--Hb_001828_060 Hb_000107_330 Hb_000107_330 Hb_003963_010--Hb_000107_330 Hb_005305_080 Hb_005305_080 Hb_003963_010--Hb_005305_080 Hb_000680_160--Hb_000032_270 Hb_002078_350 Hb_002078_350 Hb_000680_160--Hb_002078_350 Hb_003428_030 Hb_003428_030 Hb_000680_160--Hb_003428_030 Hb_003525_010 Hb_003525_010 Hb_000680_160--Hb_003525_010 Hb_001579_220 Hb_001579_220 Hb_000680_160--Hb_001579_220 Hb_005188_080 Hb_005188_080 Hb_000680_160--Hb_005188_080 Hb_008648_010 Hb_008648_010 Hb_005194_010--Hb_008648_010 Hb_000521_050 Hb_000521_050 Hb_005194_010--Hb_000521_050 Hb_005194_010--Hb_001828_060 Hb_002477_070 Hb_002477_070 Hb_005194_010--Hb_002477_070 Hb_001828_190 Hb_001828_190 Hb_005194_010--Hb_001828_190 Hb_002226_070 Hb_002226_070 Hb_005194_010--Hb_002226_070 Hb_000032_270--Hb_003428_030 Hb_003057_100 Hb_003057_100 Hb_000032_270--Hb_003057_100 Hb_005846_040 Hb_005846_040 Hb_000032_270--Hb_005846_040 Hb_001758_100 Hb_001758_100 Hb_000032_270--Hb_001758_100 Hb_007691_030 Hb_007691_030 Hb_000032_270--Hb_007691_030 Hb_002534_150 Hb_002534_150 Hb_001828_060--Hb_002534_150 Hb_005725_250 Hb_005725_250 Hb_001828_060--Hb_005725_250 Hb_000059_370 Hb_000059_370 Hb_001828_060--Hb_000059_370 Hb_027380_050 Hb_027380_050 Hb_001828_060--Hb_027380_050 Hb_003780_030 Hb_003780_030 Hb_001828_060--Hb_003780_030 Hb_012490_070 Hb_012490_070 Hb_001828_060--Hb_012490_070 Hb_044728_010 Hb_044728_010 Hb_000107_330--Hb_044728_010 Hb_000092_170 Hb_000092_170 Hb_000107_330--Hb_000092_170 Hb_009767_110 Hb_009767_110 Hb_000107_330--Hb_009767_110 Hb_000085_050 Hb_000085_050 Hb_000107_330--Hb_000085_050 Hb_000107_330--Hb_003525_010 Hb_000025_640 Hb_000025_640 Hb_000107_330--Hb_000025_640 Hb_010504_020 Hb_010504_020 Hb_005305_080--Hb_010504_020 Hb_005618_170 Hb_005618_170 Hb_005305_080--Hb_005618_170 Hb_000510_130 Hb_000510_130 Hb_005305_080--Hb_000510_130 Hb_004254_120 Hb_004254_120 Hb_005305_080--Hb_004254_120 Hb_032202_190 Hb_032202_190 Hb_005305_080--Hb_032202_190 Hb_000876_070 Hb_000876_070 Hb_005305_080--Hb_000876_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.03569 3.87035 1.49229 3.45456 6.90313 3.9296
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.92093 7.23922 5.07361 4.10855 2.59258

CAGE analysis