Hb_003963_030

Information

Type -
Description -
Location Contig3963: 20171-21587
Sequence    

Annotation

kegg
ID atr:AmtrCp049
description psbB; photosystem II P680 chlorophyll A apoprotein
nr
ID YP_002720138.1
description psbB [Jatropha curcas]
swissprot
ID B1NWH6
description Photosystem II CP47 reaction center protein OS=Manihot esculenta GN=psbB PE=3 SV=1
trembl
ID C0LEA0
description Photosystem II CP47 reaction center protein OS=Jatropha curcas GN=psbB PE=3 SV=1
Gene Ontology
ID GO:0009507
description photosystem ii 47 kda protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003963_030 0.0 - - psbB [Jatropha curcas]
2 Hb_007645_050 0.0338149251 - - acetyl-CoA carboxylase beta subunit [Hevea brasiliensis]
3 Hb_088080_010 0.0498829914 - - photosystem I P700 chlorophyll a apoprotein A1 [Matelea biflora]
4 Hb_007595_030 0.0507253564 - - psbA gene product (chloroplast) [Silene noctiflora]
5 Hb_154980_010 0.0591563112 - - photosystem I P700 chlorophyll A apoprotein A2 [Medicago truncatula]
6 Hb_031194_030 0.0667839226 - - ribulose 1,5-bisphosphate carboxylase/oxygenase [Stackhousia minima]
7 Hb_002835_420 0.0674824383 - - photosystem I P700 chlorophyll A apoprotein A2 [Medicago truncatula]
8 Hb_106850_010 0.0692898488 - - photosystem II protein D2 [Lactuca sativa]
9 Hb_007645_060 0.0709836622 - - cytochrome f [Hevea brasiliensis]
10 Hb_126973_010 0.0792367904 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g34110 [Vitis vinifera]
11 Hb_005018_050 0.0813283266 - - PREDICTED: licodione synthase-like [Jatropha curcas]
12 Hb_003407_050 0.0823473128 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
13 Hb_145745_030 0.083305445 - - BnaC09g26890D [Brassica napus]
14 Hb_151890_020 0.0846647796 - - photosystem II cp47 protein, partial (chloroplast) [Pentaphragma sp. Duangjai 49]
15 Hb_003688_030 0.0848212639 - - NADH dehydrogenase 2-like ORF 180
16 Hb_007044_030 0.0875931753 - - Os06g0273400 [Oryza sativa Japonica Group]
17 Hb_003120_090 0.0916213416 - - PREDICTED: uncharacterized protein LOC100264374 [Vitis vinifera]
18 Hb_000938_050 0.0930234488 - - hypothetical protein JCGZ_09640 [Jatropha curcas]
19 Hb_007645_040 0.0933321771 - - ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Tachigali myrmecophila]
20 Hb_104509_010 0.095081602 - - photosystem II CP43 chlorophyll apoprotein (chloroplast) [Ficus sp. Moore 315]

Gene co-expression network

sample Hb_003963_030 Hb_003963_030 Hb_007645_050 Hb_007645_050 Hb_003963_030--Hb_007645_050 Hb_088080_010 Hb_088080_010 Hb_003963_030--Hb_088080_010 Hb_007595_030 Hb_007595_030 Hb_003963_030--Hb_007595_030 Hb_154980_010 Hb_154980_010 Hb_003963_030--Hb_154980_010 Hb_031194_030 Hb_031194_030 Hb_003963_030--Hb_031194_030 Hb_002835_420 Hb_002835_420 Hb_003963_030--Hb_002835_420 Hb_007645_050--Hb_088080_010 Hb_007645_050--Hb_007595_030 Hb_007645_050--Hb_031194_030 Hb_007645_060 Hb_007645_060 Hb_007645_050--Hb_007645_060 Hb_007645_050--Hb_154980_010 Hb_088080_010--Hb_007595_030 Hb_088080_010--Hb_031194_030 Hb_005018_050 Hb_005018_050 Hb_088080_010--Hb_005018_050 Hb_003120_090 Hb_003120_090 Hb_088080_010--Hb_003120_090 Hb_007595_030--Hb_031194_030 Hb_007595_030--Hb_005018_050 Hb_003407_050 Hb_003407_050 Hb_007595_030--Hb_003407_050 Hb_154980_010--Hb_002835_420 Hb_106850_010 Hb_106850_010 Hb_154980_010--Hb_106850_010 Hb_104509_010 Hb_104509_010 Hb_154980_010--Hb_104509_010 Hb_006302_050 Hb_006302_050 Hb_154980_010--Hb_006302_050 Hb_126973_010 Hb_126973_010 Hb_154980_010--Hb_126973_010 Hb_154980_010--Hb_031194_030 Hb_031194_030--Hb_005018_050 Hb_031194_030--Hb_003120_090 Hb_031194_030--Hb_003407_050 Hb_002704_090 Hb_002704_090 Hb_031194_030--Hb_002704_090 Hb_002835_420--Hb_106850_010 Hb_002835_420--Hb_104509_010 Hb_002835_420--Hb_031194_030 Hb_002835_420--Hb_126973_010 Hb_002835_420--Hb_006302_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.437337 0.419075 5.18738 3.2517 0.303853 0.487678
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.250157 0.0655915 0.18281 0.144576 169.191

CAGE analysis