Hb_003963_040

Information

Type -
Description -
Location Contig3963: 22664-26467
Sequence    

Annotation

kegg
ID rcu:RCOM_ORF00069
description clpP; ATP-dependent Clp protease proteolytic subunit
nr
ID YP_004327687.1
description ATP-dependent Clp protease proteolytic subunit [Hevea brasiliensis]
swissprot
ID A4GYT6
description ATP-dependent Clp protease proteolytic subunit OS=Populus trichocarpa GN=clpP PE=3 SV=1
trembl
ID F2X0E1
description ATP-dependent Clp protease proteolytic subunit OS=Hevea brasiliensis GN=clpP PE=3 SV=1
Gene Ontology
ID GO:0009570
description atp-dependent clp protease proteolytic subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39560: 18551-22019 , PASA_asmbl_39561: 22274-22759 , PASA_asmbl_39562: 22836-23351 , PASA_asmbl_39564: 24458-25037
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003963_040 0.0 - - ATP-dependent Clp protease proteolytic subunit [Hevea brasiliensis]
2 Hb_001338_150 0.0894009951 - - hypothetical chloroplast RF1 [Dillenia indica]
3 Hb_003032_090 0.0961915124 - - hypothetical protein POPTR_0018s06450g [Populus trichocarpa]
4 Hb_001338_160 0.1136693699 - - NADH dehydrogenase subunit 5 [Hevea brasiliensis]
5 Hb_005399_040 0.1198524555 - - RNA polymerase beta subunit [Hevea brasiliensis]
6 Hb_000156_240 0.1212745684 - - hypothetical protein MPER_07741 [Moniliophthora perniciosa FA553]
7 Hb_005399_050 0.1289835627 - - DNA-directed RNA polymerase subunit beta [Glycine soja]
8 Hb_003693_020 0.1295582754 - - Ycf1, partial (chloroplast) [Clusia rosea]
9 Hb_162094_010 0.129883955 - - RNA polymerase alpha subunit [Hevea brasiliensis]
10 Hb_007595_050 0.1320606975 - - hypothetical chloroplast RF2 [Hevea brasiliensis]
11 Hb_185274_010 0.1328181564 - - hypothetical protein ARALYDRAFT_330174 [Arabidopsis lyrata subsp. lyrata]
12 Hb_106552_030 0.1362821647 - - hypothetical protein POPTR_0006s23180g [Populus trichocarpa]
13 Hb_003693_060 0.1366736095 - - NAD(P)H-quinone oxidoreductase subunit 6 [Medicago truncatula]
14 Hb_002835_090 0.1397942822 - - RecName: Full=Elongation factor Tu, chloroplastic; Short=EF-Tu; Flags: Precursor [Glycine max]
15 Hb_001155_020 0.1410601752 - - Leucine-rich repeat protein kinase family protein isoform 2 [Theobroma cacao]
16 Hb_103465_010 0.142578471 - - RNA polymerase beta subunit [Hevea brasiliensis]
17 Hb_185274_020 0.1474794725 - - Ycf2 (chloroplast) [Andrographis paniculata]
18 Hb_031194_010 0.1523156854 - - NADH-plastoquinone oxidoreductase subunit 2 (chloroplast) [Arachis hypogaea]
19 Hb_006925_030 0.1551158492 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18840-like [Populus euphratica]
20 Hb_002027_420 0.1637216338 - - hypothetical protein POPTR_0020s00240g [Populus trichocarpa]

Gene co-expression network

sample Hb_003963_040 Hb_003963_040 Hb_001338_150 Hb_001338_150 Hb_003963_040--Hb_001338_150 Hb_003032_090 Hb_003032_090 Hb_003963_040--Hb_003032_090 Hb_001338_160 Hb_001338_160 Hb_003963_040--Hb_001338_160 Hb_005399_040 Hb_005399_040 Hb_003963_040--Hb_005399_040 Hb_000156_240 Hb_000156_240 Hb_003963_040--Hb_000156_240 Hb_005399_050 Hb_005399_050 Hb_003963_040--Hb_005399_050 Hb_001338_150--Hb_003032_090 Hb_003693_030 Hb_003693_030 Hb_001338_150--Hb_003693_030 Hb_001338_150--Hb_001338_160 Hb_003693_020 Hb_003693_020 Hb_001338_150--Hb_003693_020 Hb_001338_150--Hb_000156_240 Hb_185274_020 Hb_185274_020 Hb_003032_090--Hb_185274_020 Hb_003032_090--Hb_000156_240 Hb_003032_090--Hb_001338_160 Hb_002835_090 Hb_002835_090 Hb_003032_090--Hb_002835_090 Hb_001155_020 Hb_001155_020 Hb_001338_160--Hb_001155_020 Hb_162094_010 Hb_162094_010 Hb_001338_160--Hb_162094_010 Hb_001338_160--Hb_002835_090 Hb_000261_390 Hb_000261_390 Hb_005399_040--Hb_000261_390 Hb_005399_040--Hb_005399_050 Hb_185274_010 Hb_185274_010 Hb_005399_040--Hb_185274_010 Hb_001135_170 Hb_001135_170 Hb_005399_040--Hb_001135_170 Hb_001488_320 Hb_001488_320 Hb_005399_040--Hb_001488_320 Hb_103465_010 Hb_103465_010 Hb_000156_240--Hb_103465_010 Hb_001083_040 Hb_001083_040 Hb_000156_240--Hb_001083_040 Hb_004542_030 Hb_004542_030 Hb_000156_240--Hb_004542_030 Hb_002027_420 Hb_002027_420 Hb_000156_240--Hb_002027_420 Hb_031194_010 Hb_031194_010 Hb_000156_240--Hb_031194_010 Hb_004811_010 Hb_004811_010 Hb_000156_240--Hb_004811_010 Hb_005399_050--Hb_185274_010 Hb_007504_040 Hb_007504_040 Hb_005399_050--Hb_007504_040 Hb_007595_050 Hb_007595_050 Hb_005399_050--Hb_007595_050 Hb_003861_150 Hb_003861_150 Hb_005399_050--Hb_003861_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.19262 0.658778 6.42556 1.2237 1.06001 1.24843
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.19368 0.0969845 0.158487 0.302594 32.4271

CAGE analysis