Hb_003964_050

Information

Type transcription factor
Description TF Family: NAC
Location Contig3964: 75025-75951
Sequence    

Annotation

kegg
ID rcu:RCOM_1621070
description transcription factor, putative
nr
ID XP_012068346.1
description PREDICTED: NAC transcription factor 25-like [Jatropha curcas]
swissprot
ID Q8H115
description NAC domain-containing protein 102 OS=Arabidopsis thaliana GN=NAC102 PE=1 SV=1
trembl
ID R4N5Q9
description NAC transcription factor 051 OS=Jatropha curcas GN=JCGZ_15693 PE=4 SV=1
Gene Ontology
ID GO:0005634
description nac transcription factor 29-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39570: 75327-75749
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003964_050 0.0 transcription factor TF Family: NAC PREDICTED: NAC transcription factor 25-like [Jatropha curcas]
2 Hb_012084_010 0.1054234383 - - cold regulated protein [Manihot esculenta]
3 Hb_008059_040 0.1149185178 - - hypothetical protein POPTR_0019s12360g [Populus trichocarpa]
4 Hb_012633_010 0.1222621375 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 49 [Jatropha curcas]
5 Hb_005839_080 0.1290582014 - - Transcription factor bHLH61 isoform 1 [Theobroma cacao]
6 Hb_078954_020 0.1315862778 - - PREDICTED: cytochrome P450 76A1-like [Jatropha curcas]
7 Hb_103709_010 0.1434151581 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
8 Hb_000282_010 0.1438560832 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001218_060 0.1497512498 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000505_030 0.1602991207 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002079_100 0.1635400549 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG5 [Jatropha curcas]
12 Hb_000731_030 0.1640320327 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
13 Hb_001606_040 0.1669225729 - - Rho GDP-dissociation inhibitor, putative [Ricinus communis]
14 Hb_000152_200 0.1670911405 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase ERL2 isoform X1 [Jatropha curcas]
15 Hb_002447_060 0.1689158071 - - PREDICTED: polyamine oxidase 1 isoform X1 [Jatropha curcas]
16 Hb_177533_010 0.176228047 - - Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]
17 Hb_000280_100 0.1762750985 - - hypothetical protein JCGZ_13378 [Jatropha curcas]
18 Hb_007632_200 0.1766421449 - - hypothetical protein L484_018221 [Morus notabilis]
19 Hb_003077_010 0.1776860833 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit O, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_022406_010 0.1786930822 - - UDP-glucosyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_003964_050 Hb_003964_050 Hb_012084_010 Hb_012084_010 Hb_003964_050--Hb_012084_010 Hb_008059_040 Hb_008059_040 Hb_003964_050--Hb_008059_040 Hb_012633_010 Hb_012633_010 Hb_003964_050--Hb_012633_010 Hb_005839_080 Hb_005839_080 Hb_003964_050--Hb_005839_080 Hb_078954_020 Hb_078954_020 Hb_003964_050--Hb_078954_020 Hb_103709_010 Hb_103709_010 Hb_003964_050--Hb_103709_010 Hb_012084_010--Hb_103709_010 Hb_001606_040 Hb_001606_040 Hb_012084_010--Hb_001606_040 Hb_022406_010 Hb_022406_010 Hb_012084_010--Hb_022406_010 Hb_001218_060 Hb_001218_060 Hb_012084_010--Hb_001218_060 Hb_012084_010--Hb_005839_080 Hb_008059_040--Hb_103709_010 Hb_008059_040--Hb_012084_010 Hb_008059_040--Hb_001218_060 Hb_008059_040--Hb_078954_020 Hb_008059_040--Hb_005839_080 Hb_002447_060 Hb_002447_060 Hb_012633_010--Hb_002447_060 Hb_002079_100 Hb_002079_100 Hb_012633_010--Hb_002079_100 Hb_006519_020 Hb_006519_020 Hb_012633_010--Hb_006519_020 Hb_001040_050 Hb_001040_050 Hb_012633_010--Hb_001040_050 Hb_000505_030 Hb_000505_030 Hb_012633_010--Hb_000505_030 Hb_163140_010 Hb_163140_010 Hb_012633_010--Hb_163140_010 Hb_007632_200 Hb_007632_200 Hb_005839_080--Hb_007632_200 Hb_000152_580 Hb_000152_580 Hb_005839_080--Hb_000152_580 Hb_005839_080--Hb_022406_010 Hb_088118_010 Hb_088118_010 Hb_005839_080--Hb_088118_010 Hb_000282_010 Hb_000282_010 Hb_078954_020--Hb_000282_010 Hb_078954_020--Hb_001218_060 Hb_001123_340 Hb_001123_340 Hb_078954_020--Hb_001123_340 Hb_001926_010 Hb_001926_010 Hb_078954_020--Hb_001926_010 Hb_000152_200 Hb_000152_200 Hb_078954_020--Hb_000152_200 Hb_063584_010 Hb_063584_010 Hb_078954_020--Hb_063584_010 Hb_149985_030 Hb_149985_030 Hb_103709_010--Hb_149985_030 Hb_103709_010--Hb_022406_010 Hb_103709_010--Hb_001218_060 Hb_103709_010--Hb_001606_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.60554 10.6435 0.276676 0.0412617 0.0729974
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.122302 0.727699

CAGE analysis