Hb_003964_070

Information

Type -
Description -
Location Contig3964: 101715-107508
Sequence    

Annotation

kegg
ID rcu:RCOM_1621020
description protein with unknown function
nr
ID KDP41288.1
description hypothetical protein JCGZ_15695 [Jatropha curcas]
swissprot
ID Q99MB4
description COBW domain-containing protein 1 OS=Rattus norvegicus GN=Cbwd1 PE=2 SV=2
trembl
ID A0A067L262
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15695 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39573: 101794-101911 , PASA_asmbl_39574: 102611-107394
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003964_070 0.0 - - hypothetical protein JCGZ_15695 [Jatropha curcas]
2 Hb_003665_060 0.0511126848 - - PREDICTED: protein N-lysine methyltransferase METTL21A [Jatropha curcas]
3 Hb_007317_110 0.0547832458 - - PREDICTED: uncharacterized RNA-binding protein C660.15-like [Jatropha curcas]
4 Hb_000120_670 0.0582954082 - - PREDICTED: SRSF protein kinase 2-like [Jatropha curcas]
5 Hb_001357_350 0.0595048929 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000345_240 0.0606862139 - - PREDICTED: cyclin-H1-1 [Jatropha curcas]
7 Hb_010381_090 0.0630462392 - - PREDICTED: protein FLX-like 3 [Jatropha curcas]
8 Hb_004414_060 0.0654990917 - - hypothetical protein JCGZ_17225 [Jatropha curcas]
9 Hb_001142_030 0.0694235294 - - PREDICTED: uncharacterized protein LOC105640023 [Jatropha curcas]
10 Hb_017700_010 0.0695022107 - - PREDICTED: probable protein S-acyltransferase 15 [Jatropha curcas]
11 Hb_007416_300 0.0702204039 - - PREDICTED: COP9 signalosome complex subunit 5b-like [Jatropha curcas]
12 Hb_003750_050 0.0711735012 - - PREDICTED: THO complex subunit 4D isoform X1 [Jatropha curcas]
13 Hb_158062_010 0.0726972737 - - PREDICTED: uncharacterized protein LOC105634413 [Jatropha curcas]
14 Hb_000260_330 0.0736828301 - - PREDICTED: uncharacterized protein LOC103438625 [Malus domestica]
15 Hb_000230_560 0.0743595704 - - PREDICTED: UPF0613 protein PB24D3.06c [Jatropha curcas]
16 Hb_000010_330 0.074786291 - - PREDICTED: probable Ufm1-specific protease [Jatropha curcas]
17 Hb_000580_180 0.0760380907 - - conserved hypothetical protein [Ricinus communis]
18 Hb_143395_010 0.0763154032 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
19 Hb_000484_030 0.0776520258 - - PREDICTED: probable 26S proteasome non-ATPase regulatory subunit 3 [Jatropha curcas]
20 Hb_120410_010 0.0780061835 - - PREDICTED: vesicle-associated membrane protein 727-like [Solanum tuberosum]

Gene co-expression network

sample Hb_003964_070 Hb_003964_070 Hb_003665_060 Hb_003665_060 Hb_003964_070--Hb_003665_060 Hb_007317_110 Hb_007317_110 Hb_003964_070--Hb_007317_110 Hb_000120_670 Hb_000120_670 Hb_003964_070--Hb_000120_670 Hb_001357_350 Hb_001357_350 Hb_003964_070--Hb_001357_350 Hb_000345_240 Hb_000345_240 Hb_003964_070--Hb_000345_240 Hb_010381_090 Hb_010381_090 Hb_003964_070--Hb_010381_090 Hb_000010_330 Hb_000010_330 Hb_003665_060--Hb_000010_330 Hb_003665_060--Hb_007317_110 Hb_000230_560 Hb_000230_560 Hb_003665_060--Hb_000230_560 Hb_003030_070 Hb_003030_070 Hb_003665_060--Hb_003030_070 Hb_000085_160 Hb_000085_160 Hb_003665_060--Hb_000085_160 Hb_006827_020 Hb_006827_020 Hb_007317_110--Hb_006827_020 Hb_007317_110--Hb_000085_160 Hb_000808_270 Hb_000808_270 Hb_007317_110--Hb_000808_270 Hb_007059_010 Hb_007059_010 Hb_007317_110--Hb_007059_010 Hb_003750_050 Hb_003750_050 Hb_000120_670--Hb_003750_050 Hb_000580_180 Hb_000580_180 Hb_000120_670--Hb_000580_180 Hb_000019_030 Hb_000019_030 Hb_000120_670--Hb_000019_030 Hb_001279_150 Hb_001279_150 Hb_000120_670--Hb_001279_150 Hb_000120_670--Hb_000345_240 Hb_000417_130 Hb_000417_130 Hb_001357_350--Hb_000417_130 Hb_001142_030 Hb_001142_030 Hb_001357_350--Hb_001142_030 Hb_001268_240 Hb_001268_240 Hb_001357_350--Hb_001268_240 Hb_000883_020 Hb_000883_020 Hb_001357_350--Hb_000883_020 Hb_000215_110 Hb_000215_110 Hb_001357_350--Hb_000215_110 Hb_000260_330 Hb_000260_330 Hb_000345_240--Hb_000260_330 Hb_000345_240--Hb_003750_050 Hb_000617_180 Hb_000617_180 Hb_000345_240--Hb_000617_180 Hb_004414_060 Hb_004414_060 Hb_000345_240--Hb_004414_060 Hb_007416_300 Hb_007416_300 Hb_010381_090--Hb_007416_300 Hb_002872_030 Hb_002872_030 Hb_010381_090--Hb_002872_030 Hb_008453_140 Hb_008453_140 Hb_010381_090--Hb_008453_140 Hb_120410_010 Hb_120410_010 Hb_010381_090--Hb_120410_010 Hb_010381_090--Hb_001142_030 Hb_003549_150 Hb_003549_150 Hb_010381_090--Hb_003549_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.5725 6.9218 10.8141 12.0345 14.1952 16.0188
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.4204 12.7391 10.0663 10.8552 7.34114

CAGE analysis