Hb_003964_080

Information

Type -
Description -
Location Contig3964: 111426-118276
Sequence    

Annotation

kegg
ID rcu:RCOM_1621000
description ATP binding protein, putative
nr
ID XP_012067761.1
description PREDICTED: probable methyltransferase PMT5 [Jatropha curcas]
swissprot
ID Q3EC77
description Probable methyltransferase PMT5 OS=Arabidopsis thaliana GN=At2g03480 PE=2 SV=2
trembl
ID B9REF5
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_1621000 PE=4 SV=1
Gene Ontology
ID GO:0008168
description probable methyltransferase pmt5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39576: 111460-118346 , PASA_asmbl_39577: 114578-114753
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003964_080 0.0 - - PREDICTED: probable methyltransferase PMT5 [Jatropha curcas]
2 Hb_000753_160 0.0904822054 - - PREDICTED: uncharacterized protein LOC105640669 [Jatropha curcas]
3 Hb_000134_120 0.0939999386 - - PREDICTED: uncharacterized protein LOC105628669 [Jatropha curcas]
4 Hb_007919_110 0.0971608696 - - PREDICTED: UDP-galactose transporter 2-like [Jatropha curcas]
5 Hb_002217_320 0.1004352484 - - PREDICTED: probable O-acetyltransferase CAS1 isoform X2 [Jatropha curcas]
6 Hb_005511_130 0.1035832491 - - PREDICTED: transmembrane protein 115-like [Populus euphratica]
7 Hb_002374_270 0.1092976657 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003209_130 0.1115728746 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
9 Hb_029584_120 0.113846192 - - PREDICTED: K(+) efflux antiporter 4 isoform X1 [Jatropha curcas]
10 Hb_000258_220 0.1178493176 - - PREDICTED: probable methyltransferase PMT2 isoform X2 [Jatropha curcas]
11 Hb_002615_070 0.1193355204 - - PREDICTED: uncharacterized protein LOC105628992 isoform X1 [Jatropha curcas]
12 Hb_002304_050 0.1204450503 - - pyruvate kinase, putative [Ricinus communis]
13 Hb_074399_010 0.1216554763 - - PREDICTED: phragmoplast orienting kinesin-1 isoform X1 [Populus euphratica]
14 Hb_003449_100 0.1249330818 - - PREDICTED: protein YIPF6 homolog [Jatropha curcas]
15 Hb_018845_010 0.1265759862 - - PREDICTED: uncharacterized protein LOC105642055 [Jatropha curcas]
16 Hb_005535_080 0.128582534 - - hypothetical protein CICLE_v10012766mg [Citrus clementina]
17 Hb_164010_050 0.12881318 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH1 [Jatropha curcas]
18 Hb_000260_490 0.1293127485 - - PREDICTED: probable galacturonosyltransferase 7 isoform X3 [Jatropha curcas]
19 Hb_005357_110 0.1304873998 - - hypothetical protein B456_002G083000 [Gossypium raimondii]
20 Hb_002235_060 0.1306643668 - - plastocyanin-like domain-containing family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_003964_080 Hb_003964_080 Hb_000753_160 Hb_000753_160 Hb_003964_080--Hb_000753_160 Hb_000134_120 Hb_000134_120 Hb_003964_080--Hb_000134_120 Hb_007919_110 Hb_007919_110 Hb_003964_080--Hb_007919_110 Hb_002217_320 Hb_002217_320 Hb_003964_080--Hb_002217_320 Hb_005511_130 Hb_005511_130 Hb_003964_080--Hb_005511_130 Hb_002374_270 Hb_002374_270 Hb_003964_080--Hb_002374_270 Hb_002304_050 Hb_002304_050 Hb_000753_160--Hb_002304_050 Hb_001250_050 Hb_001250_050 Hb_000753_160--Hb_001250_050 Hb_000753_160--Hb_007919_110 Hb_003449_100 Hb_003449_100 Hb_000753_160--Hb_003449_100 Hb_002687_180 Hb_002687_180 Hb_000753_160--Hb_002687_180 Hb_001279_190 Hb_001279_190 Hb_000753_160--Hb_001279_190 Hb_000258_220 Hb_000258_220 Hb_000134_120--Hb_000258_220 Hb_003209_130 Hb_003209_130 Hb_000134_120--Hb_003209_130 Hb_029584_120 Hb_029584_120 Hb_000134_120--Hb_029584_120 Hb_000134_120--Hb_007919_110 Hb_000926_340 Hb_000926_340 Hb_000134_120--Hb_000926_340 Hb_007919_110--Hb_003449_100 Hb_002272_240 Hb_002272_240 Hb_007919_110--Hb_002272_240 Hb_012760_030 Hb_012760_030 Hb_007919_110--Hb_012760_030 Hb_007919_110--Hb_003209_130 Hb_006120_050 Hb_006120_050 Hb_007919_110--Hb_006120_050 Hb_012762_060 Hb_012762_060 Hb_002217_320--Hb_012762_060 Hb_000638_060 Hb_000638_060 Hb_002217_320--Hb_000638_060 Hb_001847_050 Hb_001847_050 Hb_002217_320--Hb_001847_050 Hb_003680_030 Hb_003680_030 Hb_002217_320--Hb_003680_030 Hb_006829_070 Hb_006829_070 Hb_002217_320--Hb_006829_070 Hb_004730_020 Hb_004730_020 Hb_005511_130--Hb_004730_020 Hb_003687_080 Hb_003687_080 Hb_005511_130--Hb_003687_080 Hb_000032_410 Hb_000032_410 Hb_005511_130--Hb_000032_410 Hb_000984_220 Hb_000984_220 Hb_005511_130--Hb_000984_220 Hb_000915_130 Hb_000915_130 Hb_005511_130--Hb_000915_130 Hb_005357_110 Hb_005357_110 Hb_005511_130--Hb_005357_110 Hb_029253_010 Hb_029253_010 Hb_002374_270--Hb_029253_010 Hb_002235_060 Hb_002235_060 Hb_002374_270--Hb_002235_060 Hb_000940_210 Hb_000940_210 Hb_002374_270--Hb_000940_210 Hb_003894_030 Hb_003894_030 Hb_002374_270--Hb_003894_030 Hb_002374_270--Hb_005357_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.0646 7.27413 14.1238 20.5203 3.23656 2.92499
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.88669 3.34344 3.24137 4.68833 5.31056

CAGE analysis