Hb_003964_100

Information

Type -
Description -
Location Contig3964: 129815-132043
Sequence    

Annotation

kegg
ID cmo:103489178
description uncharacterized LOC103489178
nr
ID XP_008446430.1
description PREDICTED: uncharacterized protein LOC103489178 [Cucumis melo]
swissprot
ID -
description -
trembl
ID A0A0A0KQU2
description Uncharacterized protein OS=Cucumis sativus GN=Csa_5G606640 PE=4 SV=1
Gene Ontology
ID GO:0043189
description PREDICTED: uncharacterized protein LOC103489178

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39579: 130720-130895
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003964_100 0.0 - - PREDICTED: uncharacterized protein LOC103489178 [Cucumis melo]
2 Hb_000751_130 0.0778471886 - - PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Jatropha curcas]
3 Hb_029866_070 0.0790217842 - - PREDICTED: myosin IB heavy chain [Jatropha curcas]
4 Hb_006846_060 0.0832236889 - - inositol hexaphosphate kinase, putative [Ricinus communis]
5 Hb_024714_010 0.0837388682 - - HSP20-like chaperones superfamily protein isoform 1 [Theobroma cacao]
6 Hb_004032_100 0.0837735304 - - PREDICTED: regulator of nonsense transcripts UPF3-like [Jatropha curcas]
7 Hb_001829_060 0.086800609 - - Eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
8 Hb_010436_060 0.0872121319 - - hypothetical protein CISIN_1g0003801mg, partial [Citrus sinensis]
9 Hb_000230_540 0.087349329 - - PREDICTED: glycine-rich RNA-binding protein 3, mitochondrial [Sesamum indicum]
10 Hb_008300_010 0.088291118 - - PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG13 homolog [Jatropha curcas]
11 Hb_002471_080 0.0917600636 - - oxidoreductase, putative [Ricinus communis]
12 Hb_000152_550 0.0920391097 - - PREDICTED: UMP-CMP kinase [Vitis vinifera]
13 Hb_010812_010 0.0921492984 - - hypothetical protein JCGZ_03306 [Jatropha curcas]
14 Hb_020000_010 0.0924091371 - - PREDICTED: KH domain-containing protein At5g56140 [Vitis vinifera]
15 Hb_002016_120 0.0925399619 - - PREDICTED: uncharacterized protein OsI_027940 [Jatropha curcas]
16 Hb_009666_040 0.0933569834 - - glutathione transferase, putative [Ricinus communis]
17 Hb_000979_230 0.093748558 - - PREDICTED: protein BCCIP homolog [Jatropha curcas]
18 Hb_000046_110 0.0946073074 - - PREDICTED: 54S ribosomal protein L39, mitochondrial [Jatropha curcas]
19 Hb_000046_290 0.0968795218 - - PREDICTED: tubby-like F-box protein 3 [Tarenaya hassleriana]
20 Hb_008544_010 0.0973258779 transcription factor TF Family: C2C2-LSD PREDICTED: protein LSD1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003964_100 Hb_003964_100 Hb_000751_130 Hb_000751_130 Hb_003964_100--Hb_000751_130 Hb_029866_070 Hb_029866_070 Hb_003964_100--Hb_029866_070 Hb_006846_060 Hb_006846_060 Hb_003964_100--Hb_006846_060 Hb_024714_010 Hb_024714_010 Hb_003964_100--Hb_024714_010 Hb_004032_100 Hb_004032_100 Hb_003964_100--Hb_004032_100 Hb_001829_060 Hb_001829_060 Hb_003964_100--Hb_001829_060 Hb_000751_130--Hb_001829_060 Hb_000274_020 Hb_000274_020 Hb_000751_130--Hb_000274_020 Hb_000087_020 Hb_000087_020 Hb_000751_130--Hb_000087_020 Hb_000751_130--Hb_004032_100 Hb_000046_110 Hb_000046_110 Hb_000751_130--Hb_000046_110 Hb_000172_030 Hb_000172_030 Hb_000751_130--Hb_000172_030 Hb_000963_180 Hb_000963_180 Hb_029866_070--Hb_000963_180 Hb_008300_010 Hb_008300_010 Hb_029866_070--Hb_008300_010 Hb_001461_010 Hb_001461_010 Hb_029866_070--Hb_001461_010 Hb_010174_020 Hb_010174_020 Hb_029866_070--Hb_010174_020 Hb_000152_550 Hb_000152_550 Hb_029866_070--Hb_000152_550 Hb_017413_010 Hb_017413_010 Hb_006846_060--Hb_017413_010 Hb_012799_160 Hb_012799_160 Hb_006846_060--Hb_012799_160 Hb_001584_190 Hb_001584_190 Hb_006846_060--Hb_001584_190 Hb_006816_210 Hb_006816_210 Hb_006846_060--Hb_006816_210 Hb_000270_370 Hb_000270_370 Hb_006846_060--Hb_000270_370 Hb_008554_070 Hb_008554_070 Hb_024714_010--Hb_008554_070 Hb_020000_010 Hb_020000_010 Hb_024714_010--Hb_020000_010 Hb_002016_120 Hb_002016_120 Hb_024714_010--Hb_002016_120 Hb_006117_070 Hb_006117_070 Hb_024714_010--Hb_006117_070 Hb_025240_040 Hb_025240_040 Hb_024714_010--Hb_025240_040 Hb_024185_020 Hb_024185_020 Hb_024714_010--Hb_024185_020 Hb_000024_080 Hb_000024_080 Hb_004032_100--Hb_000024_080 Hb_004032_100--Hb_000087_020 Hb_180301_010 Hb_180301_010 Hb_004032_100--Hb_180301_010 Hb_000787_140 Hb_000787_140 Hb_004032_100--Hb_000787_140 Hb_000085_320 Hb_000085_320 Hb_004032_100--Hb_000085_320 Hb_001109_020 Hb_001109_020 Hb_001829_060--Hb_001109_020 Hb_000329_310 Hb_000329_310 Hb_001829_060--Hb_000329_310 Hb_001829_060--Hb_000046_110 Hb_003927_130 Hb_003927_130 Hb_001829_060--Hb_003927_130 Hb_009666_040 Hb_009666_040 Hb_001829_060--Hb_009666_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.76736 0.666149 1.38488 3.94126 4.49006 8.01138
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.71241 11.4809 8.50676 3.43937 3.56734

CAGE analysis