Hb_003964_110

Information

Type -
Description -
Location Contig3964: 134842-139559
Sequence    

Annotation

kegg
ID rcu:RCOM_1620940
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012067764.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g26460, mitochondrial [Jatropha curcas]
swissprot
ID Q9FZD1
description Pentatricopeptide repeat-containing protein At1g26460, mitochondrial OS=Arabidopsis thaliana GN=At1g26460 PE=2 SV=1
trembl
ID A0A067L9X8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15702 PE=4 SV=1
Gene Ontology
ID GO:0009220
description pentatricopeptide repeat-containing protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39581: 135217-139438 , PASA_asmbl_39582: 135750-138707
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003964_110 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g26460, mitochondrial [Jatropha curcas]
2 Hb_158845_060 0.0637228286 - - PREDICTED: nudix hydrolase 3 isoform X1 [Jatropha curcas]
3 Hb_008165_020 0.0667355175 - - PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X1 [Jatropha curcas]
4 Hb_000227_320 0.0728285099 - - unnamed protein product [Vitis vinifera]
5 Hb_000331_100 0.0734095307 - - PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]
6 Hb_001414_010 0.0747520376 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
7 Hb_000665_260 0.076837266 - - PREDICTED: uncharacterized protein LOC105637620 isoform X1 [Jatropha curcas]
8 Hb_000599_360 0.0781631699 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
9 Hb_009372_020 0.0787075306 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]
10 Hb_143629_020 0.081539662 - - PREDICTED: uncharacterized protein LOC105647351 [Jatropha curcas]
11 Hb_009476_120 0.0822276577 - - Clathrin heavy chain 1 [Glycine soja]
12 Hb_000015_200 0.0846534596 - - PREDICTED: LOW QUALITY PROTEIN: heat shock cognate 70 kDa protein 2-like [Jatropha curcas]
13 Hb_021977_010 0.0865967405 - - PREDICTED: leukotriene A-4 hydrolase homolog [Jatropha curcas]
14 Hb_001507_050 0.0880830865 - - PREDICTED: cysteine desulfurase 1, chloroplastic isoform X1 [Jatropha curcas]
15 Hb_080147_050 0.0907709554 - - PREDICTED: probable plastidic glucose transporter 2 [Jatropha curcas]
16 Hb_000270_700 0.0911118945 - - PREDICTED: protease Do-like 9 [Populus euphratica]
17 Hb_000172_360 0.091142906 - - PREDICTED: apoptotic chromatin condensation inducer in the nucleus [Jatropha curcas]
18 Hb_000297_030 0.0916162161 - - PREDICTED: mitogen-activated protein kinase kinase 2 isoform X1 [Jatropha curcas]
19 Hb_160608_010 0.0916338016 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
20 Hb_004375_110 0.0916611654 - - PREDICTED: probable ATP-dependent RNA helicase DHX37 [Jatropha curcas]

Gene co-expression network

sample Hb_003964_110 Hb_003964_110 Hb_158845_060 Hb_158845_060 Hb_003964_110--Hb_158845_060 Hb_008165_020 Hb_008165_020 Hb_003964_110--Hb_008165_020 Hb_000227_320 Hb_000227_320 Hb_003964_110--Hb_000227_320 Hb_000331_100 Hb_000331_100 Hb_003964_110--Hb_000331_100 Hb_001414_010 Hb_001414_010 Hb_003964_110--Hb_001414_010 Hb_000665_260 Hb_000665_260 Hb_003964_110--Hb_000665_260 Hb_000599_360 Hb_000599_360 Hb_158845_060--Hb_000599_360 Hb_000297_030 Hb_000297_030 Hb_158845_060--Hb_000297_030 Hb_080147_050 Hb_080147_050 Hb_158845_060--Hb_080147_050 Hb_001085_080 Hb_001085_080 Hb_158845_060--Hb_001085_080 Hb_021977_010 Hb_021977_010 Hb_158845_060--Hb_021977_010 Hb_008165_020--Hb_000331_100 Hb_009476_120 Hb_009476_120 Hb_008165_020--Hb_009476_120 Hb_008165_020--Hb_001414_010 Hb_001507_050 Hb_001507_050 Hb_008165_020--Hb_001507_050 Hb_000428_030 Hb_000428_030 Hb_008165_020--Hb_000428_030 Hb_005305_100 Hb_005305_100 Hb_008165_020--Hb_005305_100 Hb_000227_320--Hb_000665_260 Hb_000072_020 Hb_000072_020 Hb_000227_320--Hb_000072_020 Hb_033363_010 Hb_033363_010 Hb_000227_320--Hb_033363_010 Hb_000950_040 Hb_000950_040 Hb_000227_320--Hb_000950_040 Hb_006949_060 Hb_006949_060 Hb_000227_320--Hb_006949_060 Hb_000331_100--Hb_000428_030 Hb_013358_060 Hb_013358_060 Hb_000331_100--Hb_013358_060 Hb_000035_100 Hb_000035_100 Hb_000331_100--Hb_000035_100 Hb_000331_100--Hb_009476_120 Hb_001414_010--Hb_021977_010 Hb_003661_010 Hb_003661_010 Hb_001414_010--Hb_003661_010 Hb_001414_010--Hb_009476_120 Hb_000300_030 Hb_000300_030 Hb_001414_010--Hb_000300_030 Hb_160608_010 Hb_160608_010 Hb_001414_010--Hb_160608_010 Hb_000665_260--Hb_008165_020 Hb_143629_020 Hb_143629_020 Hb_000665_260--Hb_143629_020 Hb_000665_260--Hb_013358_060 Hb_000665_260--Hb_000331_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.8957 20.9765 17.6241 19.1101 6.57712 6.04637
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.12751 4.38375 4.96789 19.2761 15.2555

CAGE analysis