Hb_003966_030

Information

Type -
Description -
Location Contig3966: 41728-87601
Sequence    

Annotation

kegg
ID rcu:RCOM_0941540
description Ubiquitin carboxyl-terminal hydrolase, putative (EC:3.1.2.15)
nr
ID XP_012084497.1
description PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like isoform X7 [Jatropha curcas]
swissprot
ID Q9FPT1
description Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12 PE=1 SV=2
trembl
ID A0A067JU88
description Ubiquitin carboxyl-terminal hydrolase OS=Jatropha curcas GN=JCGZ_20169 PE=3 SV=1
Gene Ontology
ID GO:0005515
description 2 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39586: 41710-68562 , PASA_asmbl_39587: 41825-68562
cDNA
(Sanger)
(ID:Location)		 048_H17.ab1: 41710-48247

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003966_030 0.0 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like isoform X7 [Jatropha curcas]
2 Hb_003362_070 0.0499154848 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
3 Hb_004102_140 0.0524641159 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001617_060 0.0531515474 - - PREDICTED: polyadenylate-binding protein RBP45B isoform X1 [Jatropha curcas]
5 Hb_000613_080 0.0553793981 - - PREDICTED: mucin-5AC-like [Nicotiana sylvestris]
6 Hb_003044_020 0.0568378689 - - PREDICTED: uncharacterized protein LOC105641479 [Jatropha curcas]
7 Hb_000347_130 0.0641065263 - - PREDICTED: nuclear pore complex protein NUP107 [Jatropha curcas]
8 Hb_000470_070 0.0643150516 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP43-like [Jatropha curcas]
9 Hb_000785_040 0.0645415422 - - PREDICTED: uncharacterized protein LOC105628919 [Jatropha curcas]
10 Hb_004096_100 0.0655812389 - - PREDICTED: NADPH-dependent diflavin oxidoreductase 1 [Jatropha curcas]
11 Hb_000283_070 0.0681289496 - - PREDICTED: T-complex protein 1 subunit delta [Jatropha curcas]
12 Hb_003428_070 0.0694511725 - - DEAD-box ATP-dependent RNA helicase 46 -like protein [Gossypium arboreum]
13 Hb_004935_030 0.0695953357 - - PREDICTED: uncharacterized protein LOC102628125 [Citrus sinensis]
14 Hb_174821_010 0.0701780869 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 14 [Jatropha curcas]
15 Hb_000922_370 0.0710166187 - - PREDICTED: uncharacterized protein LOC105640366 [Jatropha curcas]
16 Hb_000600_070 0.0712262831 - - PREDICTED: leucine aminopeptidase 1-like [Jatropha curcas]
17 Hb_048476_180 0.0713257684 - - PREDICTED: nuclear pore complex protein NUP155 [Jatropha curcas]
18 Hb_016898_010 0.0742407963 - - PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]
19 Hb_002551_070 0.0744751589 - - hypothetical protein POPTR_0019s10130g [Populus trichocarpa]
20 Hb_000183_020 0.0745642311 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003966_030 Hb_003966_030 Hb_003362_070 Hb_003362_070 Hb_003966_030--Hb_003362_070 Hb_004102_140 Hb_004102_140 Hb_003966_030--Hb_004102_140 Hb_001617_060 Hb_001617_060 Hb_003966_030--Hb_001617_060 Hb_000613_080 Hb_000613_080 Hb_003966_030--Hb_000613_080 Hb_003044_020 Hb_003044_020 Hb_003966_030--Hb_003044_020 Hb_000347_130 Hb_000347_130 Hb_003966_030--Hb_000347_130 Hb_016898_010 Hb_016898_010 Hb_003362_070--Hb_016898_010 Hb_004935_030 Hb_004935_030 Hb_003362_070--Hb_004935_030 Hb_048476_180 Hb_048476_180 Hb_003362_070--Hb_048476_180 Hb_000922_370 Hb_000922_370 Hb_003362_070--Hb_000922_370 Hb_003362_070--Hb_003044_020 Hb_001488_410 Hb_001488_410 Hb_004102_140--Hb_001488_410 Hb_004102_140--Hb_001617_060 Hb_004102_140--Hb_003362_070 Hb_000820_170 Hb_000820_170 Hb_004102_140--Hb_000820_170 Hb_004096_100 Hb_004096_100 Hb_004102_140--Hb_004096_100 Hb_001617_060--Hb_000613_080 Hb_000470_070 Hb_000470_070 Hb_001617_060--Hb_000470_070 Hb_001617_060--Hb_003362_070 Hb_001617_060--Hb_004935_030 Hb_174821_010 Hb_174821_010 Hb_000613_080--Hb_174821_010 Hb_003449_070 Hb_003449_070 Hb_000613_080--Hb_003449_070 Hb_000613_080--Hb_003044_020 Hb_000613_080--Hb_000922_370 Hb_003044_020--Hb_000922_370 Hb_000183_020 Hb_000183_020 Hb_003044_020--Hb_000183_020 Hb_006252_020 Hb_006252_020 Hb_003044_020--Hb_006252_020 Hb_002329_040 Hb_002329_040 Hb_003044_020--Hb_002329_040 Hb_000600_070 Hb_000600_070 Hb_000347_130--Hb_000600_070 Hb_000567_010 Hb_000567_010 Hb_000347_130--Hb_000567_010 Hb_005494_020 Hb_005494_020 Hb_000347_130--Hb_005494_020 Hb_025012_010 Hb_025012_010 Hb_000347_130--Hb_025012_010 Hb_003428_070 Hb_003428_070 Hb_000347_130--Hb_003428_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.361 32.828 21.867 25.1065 46.3227 70.0648
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.0348 16.4093 32.0751 34.6847 26.4883

CAGE analysis