Hb_003966_040

Information

Type -
Description -
Location Contig3966: 91268-93177
Sequence    

Annotation

kegg
ID rcu:RCOM_0855200
description 40S ribosomal protein S9, putative
nr
ID XP_012080241.1
description PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
swissprot
ID Q9FLF0
description 40S ribosomal protein S9-2 OS=Arabidopsis thaliana GN=RPS9C PE=2 SV=1
trembl
ID A0A067K8C2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11609 PE=3 SV=1
Gene Ontology
ID GO:0005622
description 40s ribosomal protein s9-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39591: 92547-93504 , PASA_asmbl_39592: 93337-93615
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003966_040 0.0 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
2 Hb_001195_280 0.11323357 - - PREDICTED: uncharacterized protein LOC103928873 isoform X1 [Pyrus x bretschneideri]
3 Hb_028347_010 0.1304031673 - - -
4 Hb_000537_080 0.1333563626 - - conserved hypothetical protein [Ricinus communis]
5 Hb_139518_030 0.1349462489 - - protein kinase atn1, putative [Ricinus communis]
6 Hb_027760_010 0.1363484836 - - PREDICTED: uncharacterized protein LOC105630460 [Jatropha curcas]
7 Hb_005690_010 0.1414060061 - - PREDICTED: origin recognition complex subunit 2 [Populus euphratica]
8 Hb_004117_010 0.141475768 - - 60S ribosomal protein L10, mitochondrial, putative [Ricinus communis]
9 Hb_002477_140 0.141684654 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-3 isoform X1 [Jatropha curcas]
10 Hb_003185_080 0.1425534622 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
11 Hb_000030_290 0.1454228094 - - PREDICTED: uncharacterized protein LOC100247068 [Vitis vinifera]
12 Hb_000340_260 0.1457392513 - - Auxin-binding protein T85 precursor, putative [Ricinus communis]
13 Hb_004735_040 0.1464098419 - - PREDICTED: GTP-binding nuclear protein Ran1A-like [Jatropha curcas]
14 Hb_005306_170 0.1488851099 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
15 Hb_001534_050 0.1490024709 - - PREDICTED: uncharacterized protein LOC105642299 [Jatropha curcas]
16 Hb_000109_090 0.1493294013 - - PREDICTED: deoxyhypusine hydroxylase [Jatropha curcas]
17 Hb_009711_020 0.1513359383 - - PREDICTED: uncharacterized protein LOC105647794 isoform X2 [Jatropha curcas]
18 Hb_017002_020 0.1525763234 - - PREDICTED: uncharacterized protein LOC105650411 [Jatropha curcas]
19 Hb_003749_010 0.1529437827 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002609_210 0.1546946531 - - PREDICTED: pleckstrin homology domain-containing protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_003966_040 Hb_003966_040 Hb_001195_280 Hb_001195_280 Hb_003966_040--Hb_001195_280 Hb_028347_010 Hb_028347_010 Hb_003966_040--Hb_028347_010 Hb_000537_080 Hb_000537_080 Hb_003966_040--Hb_000537_080 Hb_139518_030 Hb_139518_030 Hb_003966_040--Hb_139518_030 Hb_027760_010 Hb_027760_010 Hb_003966_040--Hb_027760_010 Hb_005690_010 Hb_005690_010 Hb_003966_040--Hb_005690_010 Hb_004735_040 Hb_004735_040 Hb_001195_280--Hb_004735_040 Hb_001105_030 Hb_001105_030 Hb_001195_280--Hb_001105_030 Hb_001157_020 Hb_001157_020 Hb_001195_280--Hb_001157_020 Hb_002609_020 Hb_002609_020 Hb_001195_280--Hb_002609_020 Hb_000059_370 Hb_000059_370 Hb_001195_280--Hb_000059_370 Hb_012725_050 Hb_012725_050 Hb_001195_280--Hb_012725_050 Hb_028347_010--Hb_027760_010 Hb_000684_090 Hb_000684_090 Hb_028347_010--Hb_000684_090 Hb_011381_060 Hb_011381_060 Hb_028347_010--Hb_011381_060 Hb_001951_140 Hb_001951_140 Hb_028347_010--Hb_001951_140 Hb_000887_020 Hb_000887_020 Hb_028347_010--Hb_000887_020 Hb_002045_040 Hb_002045_040 Hb_028347_010--Hb_002045_040 Hb_002486_040 Hb_002486_040 Hb_000537_080--Hb_002486_040 Hb_002477_140 Hb_002477_140 Hb_000537_080--Hb_002477_140 Hb_009265_090 Hb_009265_090 Hb_000537_080--Hb_009265_090 Hb_001504_020 Hb_001504_020 Hb_000537_080--Hb_001504_020 Hb_001534_050 Hb_001534_050 Hb_000537_080--Hb_001534_050 Hb_015279_010 Hb_015279_010 Hb_000537_080--Hb_015279_010 Hb_003607_050 Hb_003607_050 Hb_139518_030--Hb_003607_050 Hb_003125_190 Hb_003125_190 Hb_139518_030--Hb_003125_190 Hb_001504_110 Hb_001504_110 Hb_139518_030--Hb_001504_110 Hb_139518_030--Hb_001105_030 Hb_139518_030--Hb_001195_280 Hb_153112_020 Hb_153112_020 Hb_139518_030--Hb_153112_020 Hb_000630_060 Hb_000630_060 Hb_027760_010--Hb_000630_060 Hb_027760_010--Hb_002045_040 Hb_000714_030 Hb_000714_030 Hb_027760_010--Hb_000714_030 Hb_000123_230 Hb_000123_230 Hb_027760_010--Hb_000123_230 Hb_019516_020 Hb_019516_020 Hb_027760_010--Hb_019516_020 Hb_015978_060 Hb_015978_060 Hb_005690_010--Hb_015978_060 Hb_070739_010 Hb_070739_010 Hb_005690_010--Hb_070739_010 Hb_000154_080 Hb_000154_080 Hb_005690_010--Hb_000154_080 Hb_000003_080 Hb_000003_080 Hb_005690_010--Hb_000003_080 Hb_000462_140 Hb_000462_140 Hb_005690_010--Hb_000462_140 Hb_002685_190 Hb_002685_190 Hb_005690_010--Hb_002685_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.2205 2.02279 2.31841 0.672623 4.13166 2.43621
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.43507 4.84441 2.14001 1.51303 1.95176

CAGE analysis