Hb_003972_060

Information

Type -
Description -
Location Contig3972: 97836-100698
Sequence    

Annotation

kegg
ID pop:POPTR_0008s09720g
description POPTRDRAFT_564316; REVERSIBLY GLYCOSYLATED POLYPEPTIDE 3 family protein
nr
ID XP_011018877.1
description PREDICTED: UDP-arabinopyranose mutase 3 [Populus euphratica]
swissprot
ID O22666
description UDP-arabinopyranose mutase 3 OS=Arabidopsis thaliana GN=RGP3 PE=1 SV=2
trembl
ID B9HIG2
description REVERSIBLY GLYCOSYLATED POLYPEPTIDE 3 family protein OS=Populus trichocarpa GN=POPTR_0008s09720g PE=4 SV=1
Gene Ontology
ID GO:0005794
description alpha- -glucan-protein synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39622: 97615-100707 , PASA_asmbl_39623: 98357-98643 , PASA_asmbl_39624: 100043-100283
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003972_060 0.0 - - PREDICTED: UDP-arabinopyranose mutase 3 [Populus euphratica]
2 Hb_164926_040 0.1202364093 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
3 Hb_000139_140 0.1594001235 - - Acyl-CoA synthetase [Ricinus communis]
4 Hb_000165_200 0.1711516272 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
5 Hb_004330_080 0.1717975801 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 8 isoform X1 [Jatropha curcas]
6 Hb_000220_110 0.1773170558 - - fructose-bisphosphate aldolase, putative [Ricinus communis]
7 Hb_002518_090 0.1781345485 - - PREDICTED: tubulin beta-2 chain [Jatropha curcas]
8 Hb_002471_260 0.1787073742 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105634154 [Jatropha curcas]
9 Hb_006141_030 0.178713172 - - -
10 Hb_002539_010 0.1832805319 - - hypothetical protein JCGZ_15711 [Jatropha curcas]
11 Hb_000175_470 0.1861885054 - - lactoylglutathione lyase, putative [Ricinus communis]
12 Hb_011633_040 0.1864546725 - - PREDICTED: receptor-like serine/threonine-protein kinase SD1-8 [Jatropha curcas]
13 Hb_001014_190 0.1866710536 - - PREDICTED: uncharacterized protein LOC105647294 [Jatropha curcas]
14 Hb_029921_030 0.1873801857 - - conserved hypothetical protein [Ricinus communis]
15 Hb_032225_030 0.1886480533 - - PREDICTED: leucine-rich repeat extensin-like protein 2 [Jatropha curcas]
16 Hb_002835_350 0.1893141965 - - PREDICTED: uncharacterized protein LOC105640319 [Jatropha curcas]
17 Hb_000172_280 0.1900540103 - - aspartate aminotransferase, putative [Ricinus communis]
18 Hb_001769_060 0.1904461595 - - PREDICTED: F-box protein At3g12350 isoform X1 [Jatropha curcas]
19 Hb_001472_110 0.1949901886 desease resistance Gene Name: TIR_2 nucleoside-triphosphatase, putative [Ricinus communis]
20 Hb_010872_040 0.1960448723 - - hypothetical protein F775_31993 [Aegilops tauschii]

Gene co-expression network

sample Hb_003972_060 Hb_003972_060 Hb_164926_040 Hb_164926_040 Hb_003972_060--Hb_164926_040 Hb_000139_140 Hb_000139_140 Hb_003972_060--Hb_000139_140 Hb_000165_200 Hb_000165_200 Hb_003972_060--Hb_000165_200 Hb_004330_080 Hb_004330_080 Hb_003972_060--Hb_004330_080 Hb_000220_110 Hb_000220_110 Hb_003972_060--Hb_000220_110 Hb_002518_090 Hb_002518_090 Hb_003972_060--Hb_002518_090 Hb_164926_040--Hb_000165_200 Hb_001472_110 Hb_001472_110 Hb_164926_040--Hb_001472_110 Hb_002301_110 Hb_002301_110 Hb_164926_040--Hb_002301_110 Hb_000186_290 Hb_000186_290 Hb_164926_040--Hb_000186_290 Hb_008695_150 Hb_008695_150 Hb_164926_040--Hb_008695_150 Hb_000139_140--Hb_000220_110 Hb_003227_010 Hb_003227_010 Hb_000139_140--Hb_003227_010 Hb_001014_190 Hb_001014_190 Hb_000139_140--Hb_001014_190 Hb_004495_020 Hb_004495_020 Hb_000139_140--Hb_004495_020 Hb_000009_140 Hb_000009_140 Hb_000139_140--Hb_000009_140 Hb_009646_010 Hb_009646_010 Hb_000139_140--Hb_009646_010 Hb_000165_200--Hb_001472_110 Hb_004545_070 Hb_004545_070 Hb_000165_200--Hb_004545_070 Hb_000165_200--Hb_002301_110 Hb_002339_030 Hb_002339_030 Hb_000165_200--Hb_002339_030 Hb_009545_030 Hb_009545_030 Hb_000165_200--Hb_009545_030 Hb_029510_100 Hb_029510_100 Hb_004330_080--Hb_029510_100 Hb_004330_080--Hb_001014_190 Hb_135757_020 Hb_135757_020 Hb_004330_080--Hb_135757_020 Hb_004094_020 Hb_004094_020 Hb_004330_080--Hb_004094_020 Hb_000029_440 Hb_000029_440 Hb_004330_080--Hb_000029_440 Hb_030565_110 Hb_030565_110 Hb_004330_080--Hb_030565_110 Hb_001616_070 Hb_001616_070 Hb_000220_110--Hb_001616_070 Hb_000220_110--Hb_003227_010 Hb_000172_280 Hb_000172_280 Hb_000220_110--Hb_000172_280 Hb_000683_050 Hb_000683_050 Hb_000220_110--Hb_000683_050 Hb_003683_130 Hb_003683_130 Hb_000220_110--Hb_003683_130 Hb_172706_020 Hb_172706_020 Hb_002518_090--Hb_172706_020 Hb_000940_210 Hb_000940_210 Hb_002518_090--Hb_000940_210 Hb_023226_030 Hb_023226_030 Hb_002518_090--Hb_023226_030 Hb_002518_090--Hb_000220_110 Hb_004883_020 Hb_004883_020 Hb_002518_090--Hb_004883_020 Hb_000309_030 Hb_000309_030 Hb_002518_090--Hb_000309_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.47108 6.21862 19.0145 35.9154 1.90893 1.13714
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.58505 6.73823 6.83736 48.5073 7.00009

CAGE analysis