Hb_003976_010

Information

Type -
Description -
Location Contig3976: 6966-15513
Sequence    

Annotation

kegg
ID rcu:RCOM_0364790
description methionine aminopeptidase, putative (EC:3.4.11.18)
nr
ID XP_002529218.1
description methionine aminopeptidase, putative [Ricinus communis]
swissprot
ID Q56Y85
description Methionine aminopeptidase 2B OS=Arabidopsis thaliana GN=MAP2B PE=2 SV=2
trembl
ID B9ST99
description Methionine aminopeptidase 2 OS=Ricinus communis GN=RCOM_0364790 PE=3 SV=1
Gene Ontology
ID GO:0005737
description methionine aminopeptidase 2b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39633: 7007-15218 , PASA_asmbl_39634: 6964-15280 , PASA_asmbl_39635: 14076-15198
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003976_010 0.0 - - methionine aminopeptidase, putative [Ricinus communis]
2 Hb_022216_020 0.0691156063 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
3 Hb_006400_030 0.0708191255 - - hypothetical protein OsI_01237 [Oryza sativa Indica Group]
4 Hb_015001_020 0.0820181912 - - PREDICTED: la-related protein 6B [Jatropha curcas]
5 Hb_172632_090 0.0835679431 - - ribosomal pseudouridine synthase, putative [Ricinus communis]
6 Hb_001604_010 0.0854010568 - - 14-3-3 protein, putative [Ricinus communis]
7 Hb_007426_230 0.0874693188 - - hypothetical protein CICLE_v10017932mg [Citrus clementina]
8 Hb_002449_020 0.0878437031 - - PREDICTED: tRNA (guanine(9)-N1)-methyltransferase [Cucumis sativus]
9 Hb_000853_110 0.0885188342 - - PREDICTED: 60S ribosomal protein L19-1 [Jatropha curcas]
10 Hb_000174_090 0.0910029058 - - PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]
11 Hb_015746_010 0.0911446858 - - PREDICTED: triacylglycerol lipase 2-like [Jatropha curcas]
12 Hb_000019_210 0.0925725055 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase MAK3 [Jatropha curcas]
13 Hb_002097_110 0.0927668543 - - ankyrin repeat-containing protein, putative [Ricinus communis]
14 Hb_001377_290 0.0932390352 - - PREDICTED: cyclic pyranopterin monophosphate synthase accessory protein, mitochondrial [Jatropha curcas]
15 Hb_000189_620 0.0936640485 - - hypothetical protein JCGZ_23450 [Jatropha curcas]
16 Hb_005993_040 0.0945459576 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit wdr4 [Jatropha curcas]
17 Hb_000160_170 0.0963884753 - - hypothetical protein JCGZ_02506 [Jatropha curcas]
18 Hb_000613_140 0.0972412404 - - PREDICTED: indole-3-glycerol phosphate synthase, chloroplastic [Jatropha curcas]
19 Hb_008878_030 0.097721198 - - PREDICTED: uncharacterized protein At1g10890-like [Musa acuminata subsp. malaccensis]
20 Hb_000032_570 0.0981349943 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KELP [Jatropha curcas]

Gene co-expression network

sample Hb_003976_010 Hb_003976_010 Hb_022216_020 Hb_022216_020 Hb_003976_010--Hb_022216_020 Hb_006400_030 Hb_006400_030 Hb_003976_010--Hb_006400_030 Hb_015001_020 Hb_015001_020 Hb_003976_010--Hb_015001_020 Hb_172632_090 Hb_172632_090 Hb_003976_010--Hb_172632_090 Hb_001604_010 Hb_001604_010 Hb_003976_010--Hb_001604_010 Hb_007426_230 Hb_007426_230 Hb_003976_010--Hb_007426_230 Hb_001377_290 Hb_001377_290 Hb_022216_020--Hb_001377_290 Hb_018790_060 Hb_018790_060 Hb_022216_020--Hb_018790_060 Hb_002835_410 Hb_002835_410 Hb_022216_020--Hb_002835_410 Hb_000174_090 Hb_000174_090 Hb_022216_020--Hb_000174_090 Hb_022216_020--Hb_007426_230 Hb_000483_200 Hb_000483_200 Hb_006400_030--Hb_000483_200 Hb_003032_040 Hb_003032_040 Hb_006400_030--Hb_003032_040 Hb_006400_060 Hb_006400_060 Hb_006400_030--Hb_006400_060 Hb_005618_170 Hb_005618_170 Hb_006400_030--Hb_005618_170 Hb_000107_620 Hb_000107_620 Hb_006400_030--Hb_000107_620 Hb_002097_110 Hb_002097_110 Hb_015001_020--Hb_002097_110 Hb_004662_030 Hb_004662_030 Hb_015001_020--Hb_004662_030 Hb_028872_140 Hb_028872_140 Hb_015001_020--Hb_028872_140 Hb_000032_570 Hb_000032_570 Hb_015001_020--Hb_000032_570 Hb_000853_110 Hb_000853_110 Hb_015001_020--Hb_000853_110 Hb_005062_070 Hb_005062_070 Hb_015001_020--Hb_005062_070 Hb_003126_080 Hb_003126_080 Hb_172632_090--Hb_003126_080 Hb_003615_010 Hb_003615_010 Hb_172632_090--Hb_003615_010 Hb_005993_040 Hb_005993_040 Hb_172632_090--Hb_005993_040 Hb_000251_130 Hb_000251_130 Hb_172632_090--Hb_000251_130 Hb_001226_160 Hb_001226_160 Hb_172632_090--Hb_001226_160 Hb_002311_350 Hb_002311_350 Hb_172632_090--Hb_002311_350 Hb_007441_120 Hb_007441_120 Hb_001604_010--Hb_007441_120 Hb_015746_010 Hb_015746_010 Hb_001604_010--Hb_015746_010 Hb_001604_010--Hb_028872_140 Hb_001248_130 Hb_001248_130 Hb_001604_010--Hb_001248_130 Hb_000120_950 Hb_000120_950 Hb_001604_010--Hb_000120_950 Hb_001584_330 Hb_001584_330 Hb_001604_010--Hb_001584_330 Hb_004195_160 Hb_004195_160 Hb_007426_230--Hb_004195_160 Hb_007426_230--Hb_002097_110 Hb_004440_090 Hb_004440_090 Hb_007426_230--Hb_004440_090 Hb_001030_120 Hb_001030_120 Hb_007426_230--Hb_001030_120 Hb_007426_230--Hb_015001_020 Hb_000398_180 Hb_000398_180 Hb_007426_230--Hb_000398_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
83.3746 29.5961 25.0275 22.956 96.283 70.0186
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
95.1704 102.729 93.214 73.0522 21.6061

CAGE analysis