Hb_003976_030

Information

Type -
Description -
Location Contig3976: 44438-56845
Sequence    

Annotation

kegg
ID rcu:RCOM_1338780
description phenylalanyl-tRNA synthetase beta chain, putative (EC:6.1.1.20)
nr
ID XP_012075634.1
description PREDICTED: probable phenylalanine--tRNA ligase beta subunit [Jatropha curcas]
swissprot
ID Q9SGE9
description Probable phenylalanine--tRNA ligase beta subunit OS=Arabidopsis thaliana GN=At1g72550 PE=2 SV=1
trembl
ID A0A067KSW3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09227 PE=4 SV=1
Gene Ontology
ID GO:0005829
description probable phenylalanine--trna ligase beta subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39639: 44416-56201 , PASA_asmbl_39640: 55083-55385 , PASA_asmbl_39642: 48122-48588
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003976_030 0.0 - - PREDICTED: probable phenylalanine--tRNA ligase beta subunit [Jatropha curcas]
2 Hb_000092_010 0.0709773659 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646502 [Jatropha curcas]
3 Hb_012325_020 0.0777023449 - - PREDICTED: ATPase family AAA domain-containing protein At1g05910 isoform X1 [Jatropha curcas]
4 Hb_000280_080 0.0794183535 - - hypothetical protein JCGZ_13377 [Jatropha curcas]
5 Hb_000011_330 0.0809777831 - - fyve finger-containing phosphoinositide kinase, fyv1, putative [Ricinus communis]
6 Hb_005348_140 0.0850995085 - - PREDICTED: ubiquinone biosynthesis protein COQ9-B, mitochondrial [Jatropha curcas]
7 Hb_001892_020 0.0863854783 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
8 Hb_000723_130 0.0875640603 desease resistance Gene Name: CDC48_N cell division cycle protein 48 [Hevea brasiliensis]
9 Hb_001617_050 0.0876305472 - - PREDICTED: uncharacterized protein LOC105649351 isoform X1 [Jatropha curcas]
10 Hb_000723_200 0.0879369818 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105642236 isoform X1 [Jatropha curcas]
11 Hb_000907_080 0.0900919167 - - PREDICTED: uncharacterized protein LOC105640819 [Jatropha curcas]
12 Hb_002205_190 0.0919401373 - - PREDICTED: U-box domain-containing protein 62-like [Jatropha curcas]
13 Hb_002830_030 0.0926458486 - - PREDICTED: CDK5RAP3-like protein [Jatropha curcas]
14 Hb_000445_040 0.0941924719 - - PREDICTED: NAD kinase 2, chloroplastic [Jatropha curcas]
15 Hb_007765_020 0.0957400208 - - hypothetical protein JCGZ_08545 [Jatropha curcas]
16 Hb_000567_380 0.0964896602 - - ubiquitin specific protease 39 and snrnp assembly factor, putative [Ricinus communis]
17 Hb_000646_050 0.0974469589 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like [Jatropha curcas]
18 Hb_000138_110 0.0987174686 - - PREDICTED: probable protein phosphatase 2C 68 [Jatropha curcas]
19 Hb_002217_300 0.0989556598 - - PREDICTED: pentatricopeptide repeat-containing protein At3g48810 [Jatropha curcas]
20 Hb_004052_090 0.1001101379 transcription factor TF Family: C3H PREDICTED: serine/arginine repetitive matrix protein 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_003976_030 Hb_003976_030 Hb_000092_010 Hb_000092_010 Hb_003976_030--Hb_000092_010 Hb_012325_020 Hb_012325_020 Hb_003976_030--Hb_012325_020 Hb_000280_080 Hb_000280_080 Hb_003976_030--Hb_000280_080 Hb_000011_330 Hb_000011_330 Hb_003976_030--Hb_000011_330 Hb_005348_140 Hb_005348_140 Hb_003976_030--Hb_005348_140 Hb_001892_020 Hb_001892_020 Hb_003976_030--Hb_001892_020 Hb_000138_110 Hb_000138_110 Hb_000092_010--Hb_000138_110 Hb_007765_020 Hb_007765_020 Hb_000092_010--Hb_007765_020 Hb_000092_010--Hb_012325_020 Hb_000723_130 Hb_000723_130 Hb_000092_010--Hb_000723_130 Hb_000723_200 Hb_000723_200 Hb_000092_010--Hb_000723_200 Hb_001318_270 Hb_001318_270 Hb_012325_020--Hb_001318_270 Hb_001454_190 Hb_001454_190 Hb_012325_020--Hb_001454_190 Hb_000445_040 Hb_000445_040 Hb_012325_020--Hb_000445_040 Hb_001726_020 Hb_001726_020 Hb_012325_020--Hb_001726_020 Hb_001959_190 Hb_001959_190 Hb_012325_020--Hb_001959_190 Hb_000061_460 Hb_000061_460 Hb_000280_080--Hb_000061_460 Hb_000280_080--Hb_001892_020 Hb_000009_320 Hb_000009_320 Hb_000280_080--Hb_000009_320 Hb_000049_310 Hb_000049_310 Hb_000280_080--Hb_000049_310 Hb_004907_110 Hb_004907_110 Hb_000280_080--Hb_004907_110 Hb_000567_380 Hb_000567_380 Hb_000011_330--Hb_000567_380 Hb_002205_190 Hb_002205_190 Hb_000011_330--Hb_002205_190 Hb_000011_330--Hb_000092_010 Hb_000011_330--Hb_000723_130 Hb_046198_010 Hb_046198_010 Hb_000011_330--Hb_046198_010 Hb_001617_050 Hb_001617_050 Hb_005348_140--Hb_001617_050 Hb_002105_040 Hb_002105_040 Hb_005348_140--Hb_002105_040 Hb_001226_040 Hb_001226_040 Hb_005348_140--Hb_001226_040 Hb_000175_460 Hb_000175_460 Hb_005348_140--Hb_000175_460 Hb_003862_050 Hb_003862_050 Hb_005348_140--Hb_003862_050 Hb_000512_060 Hb_000512_060 Hb_005348_140--Hb_000512_060 Hb_001892_020--Hb_004907_110 Hb_007532_030 Hb_007532_030 Hb_001892_020--Hb_007532_030 Hb_002631_060 Hb_002631_060 Hb_001892_020--Hb_002631_060 Hb_001178_140 Hb_001178_140 Hb_001892_020--Hb_001178_140 Hb_010883_090 Hb_010883_090 Hb_001892_020--Hb_010883_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
47.4377 37.2507 26.5449 31.1688 40.0945 46.8814
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
49.0164 36.0415 111.814 42.0994 27.643

CAGE analysis