Hb_003978_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig3978: 10511-11638
Sequence    

Annotation

kegg
ID rcu:RCOM_1117180
description ATP binding protein, putative (EC:3.1.3.16)
nr
ID XP_012091750.1
description PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
swissprot
ID Q9LRR4
description Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1
trembl
ID A0A067JM58
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21556 PE=4 SV=1
Gene Ontology
ID GO:0043531
description disease resistance rpp13-like protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003978_010 0.0 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
2 Hb_011472_040 0.134059438 - - PREDICTED: clathrin light chain 3 [Jatropha curcas]
3 Hb_007849_040 0.1387670493 - - PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Vitis vinifera]
4 Hb_001975_070 0.1393340169 - - eukaryotic translation elongation factor 1B alpha-subunit [Hevea brasiliensis]
5 Hb_004225_180 0.1474712717 - - bel1 homeotic protein, putative [Ricinus communis]
6 Hb_001195_100 0.1497363075 - - PREDICTED: uncharacterized protein LOC105633812 [Jatropha curcas]
7 Hb_010407_070 0.1560937957 - - hypothetical protein POPTR_0008s16750g [Populus trichocarpa]
8 Hb_084934_010 0.1561799172 - - hypothetical protein JCGZ_22225 [Jatropha curcas]
9 Hb_005565_030 0.1592504825 - - PREDICTED: uncharacterized protein LOC105633107 isoform X1 [Jatropha curcas]
10 Hb_030312_040 0.1595493912 - - hypothetical protein JCGZ_04876 [Jatropha curcas]
11 Hb_000381_080 0.1618380807 transcription factor TF Family: SNF2 PREDICTED: DNA repair protein RAD16 [Jatropha curcas]
12 Hb_000139_240 0.1653512738 - - PREDICTED: putative F-box protein At3g16210 [Jatropha curcas]
13 Hb_000209_020 0.1681331579 - - PREDICTED: uncharacterized protein At4g26450 isoform X3 [Jatropha curcas]
14 Hb_017987_090 0.1683539718 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 2 [Jatropha curcas]
15 Hb_006740_020 0.1702339714 - - PREDICTED: bis(5'-adenosyl)-triphosphatase [Jatropha curcas]
16 Hb_002960_060 0.1711498894 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 28 [Jatropha curcas]
17 Hb_012052_060 0.1714000359 - - hypothetical protein POPTR_0018s10190g [Populus trichocarpa]
18 Hb_002111_030 0.1747974887 - - PREDICTED: NEDD8 ultimate buster 1 isoform X1 [Jatropha curcas]
19 Hb_000029_160 0.1758952315 - - Nitrilase, putative [Ricinus communis]
20 Hb_004070_030 0.1763372973 - - PREDICTED: phosphatidate cytidylyltransferase, mitochondrial isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_003978_010 Hb_003978_010 Hb_011472_040 Hb_011472_040 Hb_003978_010--Hb_011472_040 Hb_007849_040 Hb_007849_040 Hb_003978_010--Hb_007849_040 Hb_001975_070 Hb_001975_070 Hb_003978_010--Hb_001975_070 Hb_004225_180 Hb_004225_180 Hb_003978_010--Hb_004225_180 Hb_001195_100 Hb_001195_100 Hb_003978_010--Hb_001195_100 Hb_010407_070 Hb_010407_070 Hb_003978_010--Hb_010407_070 Hb_084934_010 Hb_084934_010 Hb_011472_040--Hb_084934_010 Hb_006189_010 Hb_006189_010 Hb_011472_040--Hb_006189_010 Hb_011472_040--Hb_001975_070 Hb_030312_040 Hb_030312_040 Hb_011472_040--Hb_030312_040 Hb_001655_070 Hb_001655_070 Hb_011472_040--Hb_001655_070 Hb_012052_060 Hb_012052_060 Hb_011472_040--Hb_012052_060 Hb_017987_090 Hb_017987_090 Hb_007849_040--Hb_017987_090 Hb_000567_200 Hb_000567_200 Hb_007849_040--Hb_000567_200 Hb_001186_060 Hb_001186_060 Hb_007849_040--Hb_001186_060 Hb_007849_040--Hb_001195_100 Hb_000033_050 Hb_000033_050 Hb_007849_040--Hb_000033_050 Hb_005147_110 Hb_005147_110 Hb_001975_070--Hb_005147_110 Hb_001009_050 Hb_001009_050 Hb_001975_070--Hb_001009_050 Hb_000029_160 Hb_000029_160 Hb_001975_070--Hb_000029_160 Hb_002960_060 Hb_002960_060 Hb_001975_070--Hb_002960_060 Hb_001341_030 Hb_001341_030 Hb_001975_070--Hb_001341_030 Hb_000373_270 Hb_000373_270 Hb_001975_070--Hb_000373_270 Hb_026698_010 Hb_026698_010 Hb_004225_180--Hb_026698_010 Hb_004225_180--Hb_010407_070 Hb_004225_180--Hb_006189_010 Hb_004225_180--Hb_011472_040 Hb_004225_180--Hb_007849_040 Hb_001195_100--Hb_001975_070 Hb_025048_030 Hb_025048_030 Hb_001195_100--Hb_025048_030 Hb_005333_020 Hb_005333_020 Hb_001195_100--Hb_005333_020 Hb_001195_100--Hb_001341_030 Hb_001195_100--Hb_001009_050 Hb_153150_010 Hb_153150_010 Hb_001195_100--Hb_153150_010 Hb_010407_070--Hb_026698_010 Hb_000050_100 Hb_000050_100 Hb_010407_070--Hb_000050_100 Hb_000116_230 Hb_000116_230 Hb_010407_070--Hb_000116_230 Hb_000599_140 Hb_000599_140 Hb_010407_070--Hb_000599_140 Hb_010407_070--Hb_007849_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.05296 2.95571 0.0652532 0.211852 2.26088 5.02952
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.54055 2.41347 0.960286 2.22187 0.152521

CAGE analysis